RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CLDN6P56747 220 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 GLO1Q04760 184 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 ZFP36L1Q07352 338 aaKnown RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 TAF13Q15543 124 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 ETFDHQ16134 617 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 SCGB2B2Q4G0G5 96 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 VWA2Q5GFL6 755 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 C1orf100Q5SVJ3 147 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 LRFN4Q6PJG9 635 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF584Q8IVC4 421 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 OR13C8Q8NGS7 320 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 ADIPOR1Q96A54 375 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 SLC6A7Q99884 636 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 PRRT1Q99946 306 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 PDCD10Q9BUL8 212 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 PTDSS2Q9BVG9 487 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 HPF1Q9NWY4 346 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 SLC2A8Q9NY64 477 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 NOP16Q9Y3C1 178 aaKnown RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 NUDT14O95848 222 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 ISG15P05161 165 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 S100PP25815 95 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 IL12BP29460 328 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 CRABP1P29762 137 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 DCAF7P61962 342 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 TMEM164Q5U3C3 297 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 RAB12Q6IQ22 244 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 PAPD4Q6PIY7 484 aaKnown RBP11.8□□□□□ -0.52
VPS4A-204ENST00000566354 ATRAIDQ6UW56 229 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 ACOT7LQ6ZUV0 252 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 PRR22Q8IZ63 422 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 JAGN1Q8N5M9 183 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 SLC38A9Q8NBW4 561 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 OR13C3Q8NGS6 347 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 OR52N5Q8NH56 324 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 FOXRED1Q96CU9 486 aaPredicted RBP11.8□□□□□ -0.52
VPS4A-204ENST00000566354 DNAJA3Q96EY1 480 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 VRK1Q99986 396 aaPredicted RBP11.8□□□□□ -0.52
VPS4A-204ENST00000566354 WDR13Q9H1Z4 485 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 LANCL2Q9NS86 450 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 MMACHCQ9Y4U1 282 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 R4GMQ9 66 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 CNOT1A5YKK6 2376 aaKnown RBP11.8□□□□□ -0.52
VPS4A-204ENST00000566354 A0A1W2PQD3 144 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 METTL21EPA6NDL7 271 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 MPTX1A8MV57 137 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 STMND1H3BQB6 276 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 SRSF10O75494 262 aaKnown RBP11.8□□□□□ -0.52
VPS4A-204ENST00000566354 HTR3BO95264 441 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 IGKV3-11P04433 115 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF28P17035 718 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 RAB6AP20340 208 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 MPZP25189 248 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 LUMP51884 338 aaPredicted RBP11.8□□□□□ -0.52
VPS4A-204ENST00000566354 ZMYND11Q15326 602 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 FAM74A1Q5RGS3 127 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 MARCH3Q86UD3 253 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 SLC25A42Q86VD7 318 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 NKAIN3Q8N8D7 197 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 CLRN3Q8NCR9 226 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 OR51A2Q8NGJ7 313 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 GAL3ST4Q96RP7 486 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 NUDT9Q9BW91 350 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 ZMAT3Q9HA38 289 aaKnown RBP11.8□□□□□ -0.52
VPS4A-204ENST00000566354 KLK13Q9UKR3 277 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 RARRES3Q9UL19 164 aa11.8□□□□□ -0.52
VPS4A-204ENST00000566354 A0A1B0GX78 115 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 OR14I1A6ND48 311 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 TMEM235A6NFC5 223 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 ALG1L2C9J202 215 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 DNASE2O00115 360 aaPredicted RBP11.79□□□□□ -0.52
VPS4A-204ENST00000566354 NPIPB7O75200 414 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 IGHMP01871 453 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 CCL4P13236 92 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 ZBTB25P24278 435 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 POLR2HP52434 150 aaKnown RBP11.79□□□□□ -0.52
VPS4A-204ENST00000566354 CXADRP78310 365 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 SPOCK1Q08629 439 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 MOGAT2Q3SYC2 334 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 PAN3Q58A45 887 aaKnown RBP11.79□□□□□ -0.52
VPS4A-204ENST00000566354 RNASE10Q5GAN6 216 aaKnown RBP11.79□□□□□ -0.52
VPS4A-204ENST00000566354 MDGA2Q7Z553 956 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 LYG2Q86SG7 212 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF721Q8TF20 911 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 PPP1R1CQ8WVI7 109 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 AQP3Q92482 292 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 MVB12AQ96EY5 273 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 LRRC46Q96FV0 321 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 PRRX2Q99811 253 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 TBL1XR1Q9BZK7 514 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 EMC9Q9Y3B6 208 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 GVINP1Q7Z2Y8 2422 aa11.79□□□□□ -0.52
VPS4A-204ENST00000566354 TMED7-TICAM2A0A0A6YYA0 188 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 A8MVM7 634 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 PLPP3O14495 311 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 EIF1BO60739 113 aaKnown RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 SCRG1O75711 98 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 DDAH2O95865 285 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 EIF1P41567 113 aaKnown RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 C1orf140Q5VVS0 124 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms