RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TMEM165Q9HC07 324 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 MMP26Q9NRE1 261 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 TANC2Q9HCD6 1990 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 PPIAL4EA0A075B759 164 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 PPIAL4CA0A0B4J2A2 164 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 A0A1B0GWJ7 208 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 FAM183AA6NL82 134 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 CD300LBA8K4G0 201 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 PPIAL4DF5H284 164 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 E2F6O75461 281 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 WNT2P09544 360 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 PPIAL4FP0DN26 164 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 IRF2P14316 349 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 HOXB6P17509 224 aaKnown RBP17.41■□□□□ 0.38
CLN3-219ENST00000565778 CA6P23280 308 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 OTX1P32242 354 aaPredicted RBP17.41■□□□□ 0.38
CLN3-219ENST00000565778 GRK5P34947 590 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 PMELP40967 661 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 SLC15A1P46059 708 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 SEC61A1P61619 476 aaKnown RBP17.41■□□□□ 0.38
CLN3-219ENST00000565778 MAB21L1Q13394 359 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 OR8G1Q15617 311 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 PCK2Q16822 640 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 DNAL1Q4LDG9 190 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 ESCO2Q56NI9 601 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 SPATC1Q76KD6 591 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 TMEM179BQ7Z7N9 219 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 OR2AE1Q8NHA4 323 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 ZNF556Q9HAH1 456 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 OPN4Q9UHM6 478 aa17.41■□□□□ 0.38
CLN3-219ENST00000565778 CEACAM18A8MTB9 384 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 ZNF878C9JN71 531 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 TRAPPC2LH3BP13 241 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 SLC2A1P11166 492 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 EIF2B1Q14232 305 aaKnown RBP17.4■□□□□ 0.38
CLN3-219ENST00000565778 FLOT2Q14254 428 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 GINS1Q14691 196 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 ZNF181Q2M3W8 571 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 GLYATL3Q5SZD4 288 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 ERI1Q8IV48 349 aaKnown RBP17.4■□□□□ 0.38
CLN3-219ENST00000565778 CELF2-AS1Q8N7Q2 184 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 OR6N2Q8NGY6 317 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 SLC22A4Q9H015 551 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 OR51V1Q9H2C8 321 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 YY1AP1Q9H869 796 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 UFSP2Q9NUQ7 469 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 NOP16Q9Y3C1 178 aaKnown RBP17.4■□□□□ 0.38
CLN3-219ENST00000565778 PPIAL4AQ9Y536 164 aa17.4■□□□□ 0.38
CLN3-219ENST00000565778 STAB1Q9NY15 2570 aa17.39■□□□□ 0.38
CLN3-219ENST00000565778 C5orf63A6NC05 138 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 ARRDC5A6NEK1 342 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 F5H0A9 414 aaPredicted RBP17.39■□□□□ 0.37
CLN3-219ENST00000565778 GMDSO60547 372 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 PAICSP22234 425 aaKnown RBP17.39■□□□□ 0.37
CLN3-219ENST00000565778 PRKACGP22612 351 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 GSTT1P30711 240 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 FAM201AQ5SY85 155 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 LINC01590Q5TEZ4 76 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 OR11L1Q8NGX0 322 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 ERGIC1Q969X5 290 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 INTS14Q96SY0 518 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 TMEM246Q9BRR3 403 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 FAM53CQ9NYF3 392 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 MIOXQ9UGB7 285 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 POLR3KQ9Y2Y1 108 aaPredicted RBP17.39■□□□□ 0.37
CLN3-219ENST00000565778 AUP1Q9Y679 476 aa17.39■□□□□ 0.37
CLN3-219ENST00000565778 TBX1O43435 398 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 GLCEO94923 617 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 RPS2P15880 293 aaKnown RBP17.38■□□□□ 0.37
CLN3-219ENST00000565778 CPT2P23786 658 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 FPR2P25090 351 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 HSD11B1P28845 292 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 CD200P41217 278 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 GATA4P43694 442 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 GRB2P62993 217 aaKnown RBP17.38■□□□□ 0.37
CLN3-219ENST00000565778 ZNF154Q13106 437 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 PRAMEF6Q5VXH4 476 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 DPY19L4Q7Z388 723 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 BPIFB2Q8N4F0 458 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 SLC7A6OSQ96CW6 309 aaPredicted RBP17.38■□□□□ 0.37
CLN3-219ENST00000565778 SSBP3Q9BWW4 388 aaPredicted RBP17.38■□□□□ 0.37
CLN3-219ENST00000565778 OR5V1Q9UGF6 321 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 LRCH1Q9Y2L9 728 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 ARHGAP32A7KAX9 2087 aa17.38■□□□□ 0.37
CLN3-219ENST00000565778 PRR23D1E9PI22 279 aaPredicted RBP17.37■□□□□ 0.37
CLN3-219ENST00000565778 DNAJC8O75937 253 aaPredicted RBP17.37■□□□□ 0.37
CLN3-219ENST00000565778 HMGN1P05114 100 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 PRR23D2P0DMB1 279 aaPredicted RBP17.37■□□□□ 0.37
CLN3-219ENST00000565778 OSMP13725 252 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 ZNF12P17014 697 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 ANOS1P23352 680 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 GNB2P62879 340 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 CBX1P83916 185 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 MPPED2Q15777 294 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 USP43Q70EL4 1123 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 SHFQ7M4L6 423 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 KLBQ86Z14 1044 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 HS3ST5Q8IZT8 346 aa17.37■□□□□ 0.37
CLN3-219ENST00000565778 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP17.37■□□□□ 0.37
CLN3-219ENST00000565778 DEFB108BQ8NET1 73 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms