RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 TMEM236Q5W0B7 351 aa15.46■□□□□ 0.07
CLN3-214ENST00000565140 MRPL21Q7Z2W9 205 aaKnown RBP15.46■□□□□ 0.07
CLN3-214ENST00000565140 DPY19L4Q7Z388 723 aa15.46■□□□□ 0.07
CLN3-214ENST00000565140 ERI1Q8IV48 349 aaKnown RBP15.46■□□□□ 0.07
CLN3-214ENST00000565140 UTP4Q969X6 686 aaKnown RBP15.46■□□□□ 0.07
CLN3-214ENST00000565140 INTS14Q96SY0 518 aa15.46■□□□□ 0.07
CLN3-214ENST00000565140 KCNJ15Q99712 375 aa15.46■□□□□ 0.07
CLN3-214ENST00000565140 REPIN1Q9BWE0 567 aaKnown RBP15.46■□□□□ 0.07
CLN3-214ENST00000565140 TMPRSS13Q9BYE2 586 aa15.46■□□□□ 0.07
CLN3-214ENST00000565140 OR51V1Q9H2C8 321 aa15.46■□□□□ 0.07
CLN3-214ENST00000565140 MARCH7Q9H992 704 aa15.46■□□□□ 0.07
CLN3-214ENST00000565140 ZNF556Q9HAH1 456 aa15.46■□□□□ 0.07
CLN3-214ENST00000565140 N6AMT1Q9Y5N5 214 aa15.46■□□□□ 0.07
CLN3-214ENST00000565140 CD300LBA8K4G0 201 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 ZNF878C9JN71 531 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 ZNF205O95201 554 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 CYB5R3P00387 301 aaPredicted RBP15.45■□□□□ 0.06
CLN3-214ENST00000565140 ANXA8P13928 327 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 TMEM155Q4W5P6 130 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 PLBD1Q6P4A8 553 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 SHQ1Q6PI26 577 aaKnown RBP15.45■□□□□ 0.06
CLN3-214ENST00000565140 MOGAT3Q86VF5 341 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 TIGD4Q8IY51 512 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 OR6N2Q8NGY6 317 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 SPRYD4Q8WW59 207 aaPredicted RBP15.45■□□□□ 0.06
CLN3-214ENST00000565140 ZMYND19Q96E35 227 aaPredicted RBP15.45■□□□□ 0.06
CLN3-214ENST00000565140 AMELYQ99218 206 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 ABHD6Q9BV23 337 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 METTL17Q9H7H0 456 aaPredicted RBP15.45■□□□□ 0.06
CLN3-214ENST00000565140 METRNQ9UJH8 293 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 PCDHB10Q9UN67 800 aa15.45■□□□□ 0.06
CLN3-214ENST00000565140 LOC105371242A0A075B767 164 aa15.44■□□□□ 0.06
CLN3-214ENST00000565140 PRR23D1E9PI22 279 aaPredicted RBP15.44■□□□□ 0.06
CLN3-214ENST00000565140 PRR23D2P0DMB1 279 aaPredicted RBP15.44■□□□□ 0.06
CLN3-214ENST00000565140 CA6P23280 308 aa15.44■□□□□ 0.06
CLN3-214ENST00000565140 SEC61A1P61619 476 aaKnown RBP15.44■□□□□ 0.06
CLN3-214ENST00000565140 FAM201AQ5SY85 155 aa15.44■□□□□ 0.06
CLN3-214ENST00000565140 DCAF12L2Q5VW00 463 aa15.44■□□□□ 0.06
CLN3-214ENST00000565140 CPOQ8IVL8 374 aa15.44■□□□□ 0.06
CLN3-214ENST00000565140 KLHL36Q8N4N3 616 aa15.44■□□□□ 0.06
CLN3-214ENST00000565140 SPICQ8N5J4 248 aa15.44■□□□□ 0.06
CLN3-214ENST00000565140 RNF133Q8WVZ7 376 aa15.44■□□□□ 0.06
CLN3-214ENST00000565140 PATZ1Q9HBE1 687 aaKnown RBP15.44■□□□□ 0.06
CLN3-214ENST00000565140 A0A0G2JMP0 313 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 A0A0X1KG70 313 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 GGT3PA6NGU5 568 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 IFNL4K9M1U5 179 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 SELENOFO60613 162 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 HMGN1P05114 100 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 PAICSP22234 425 aaKnown RBP15.43■□□□□ 0.06
CLN3-214ENST00000565140 MDH2P40926 338 aaKnown RBP15.43■□□□□ 0.06
CLN3-214ENST00000565140 DAPP51397 102 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 FAHD1Q6P587 224 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 BBS1Q8NFJ9 593 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 OR4M2Q8NGB6 313 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 NRBF2Q96F24 287 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 TMEM165Q9HC07 324 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 MMP26Q9NRE1 261 aa15.43■□□□□ 0.06
CLN3-214ENST00000565140 TENM1Q9UKZ4 2725 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 F5H0A9 414 aaPredicted RBP15.42■□□□□ 0.06
CLN3-214ENST00000565140 TRAPPC2LH3BP13 241 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 ADRA2CP18825 462 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 CD200P41217 278 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 GATA4P43694 442 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 SLC15A1P46059 708 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 CX3CR1P49238 355 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 RAD23AP54725 363 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 GRB2P62993 217 aaKnown RBP15.42■□□□□ 0.06
CLN3-214ENST00000565140 OR8G1Q15617 311 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 MPPED2Q15777 294 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 ZNF181Q2M3W8 571 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 PRAMEF6Q5VXH4 476 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 PRSS45Q7RTY3 260 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 RFLNBQ8N5W9 214 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 CELF2-AS1Q8N7Q2 184 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 SGK3Q96BR1 496 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 SLC25A19Q9HC21 320 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 ZNF319Q9P2F9 582 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 OPN4Q9UHM6 478 aa15.42■□□□□ 0.06
CLN3-214ENST00000565140 CEACAM18A8MTB9 384 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 J3QLI3 93 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 TCF21O43680 179 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 FOXH1O75593 365 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 WNT2P09544 360 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 SLC2A5P22732 501 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 OPRL1P41146 370 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 RASSF2P50749 326 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 CRISP1P54107 249 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 HOXA4Q00056 320 aaPredicted RBP15.41■□□□□ 0.06
CLN3-214ENST00000565140 KLHL12Q53G59 568 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 SHFQ7M4L6 423 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 OR56B2PQ8NGI1 322 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 DVL3Q92997 716 aaPredicted RBP15.41■□□□□ 0.06
CLN3-214ENST00000565140 SPSB4Q96A44 273 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 TOR3AQ9H497 397 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 OCEL1Q9H607 264 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 C7orf69Q9H7B7 122 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 PAPOLBQ9NRJ5 636 aaKnown RBP15.41■□□□□ 0.06
CLN3-214ENST00000565140 UFSP2Q9NUQ7 469 aa15.41■□□□□ 0.06
CLN3-214ENST00000565140 DNAJC27Q9NZQ0 273 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms