RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 WIPI2Q9Y4P8 454 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 GGT3PA6NGU5 568 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 ZAR1LA6NP61 321 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 PSKH1P11801 424 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 CFL1P23528 166 aaKnown RBP11.34□□□□□ -0.59
CLK3-213ENST00000563842 DDOSTP39656 456 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 CX3CR1P49238 355 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 APOFQ13790 326 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 KPNB1Q14974 876 aaKnown RBP11.34□□□□□ -0.59
CLK3-213ENST00000563842 SLX4IPQ5VYV7 408 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 BHLHE23Q8NDY6 225 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 OR52H1Q8NGJ2 320 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 THEM6Q8WUY1 208 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 ITLN1Q8WWA0 313 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 PYDC1Q8WXC3 89 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 TEAD3Q99594 435 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 YIPF3Q9GZM5 350 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 NARFLQ9H6Q4 476 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 TMEM106BQ9NUM4 274 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 LAMP5Q9UJQ1 280 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 OAZ3Q9UMX2 235 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 ORC6Q9Y5N6 252 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 TMEM14AQ9Y6G1 99 aa11.34□□□□□ -0.59
CLK3-213ENST00000563842 CD300LBA8K4G0 201 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 SELENOFO60613 162 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 MITFO75030 526 aaPredicted RBP11.33□□□□□ -0.6
CLK3-213ENST00000563842 IFNA2P01563 188 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 ANXA2P07355 339 aaKnown RBP11.33□□□□□ -0.6
CLK3-213ENST00000563842 SLC2A5P22732 501 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 IL2RGP31785 369 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 DVL1P1P54792 670 aaPredicted RBP11.33□□□□□ -0.6
CLK3-213ENST00000563842 ZNF92Q03936 586 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 MZT1Q08AG7 82 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 SNCBQ16143 134 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 TIGD6Q17RP2 521 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 SNAI3Q3KNW1 292 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 AVPI1Q5T686 147 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 KCTD18Q6PI47 426 aaPredicted RBP11.33□□□□□ -0.6
CLK3-213ENST00000563842 SPATC1Q76KD6 591 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 SLC16A9Q7RTY1 509 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 GLCCI1Q86VQ1 547 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 KLBQ86Z14 1044 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 CELF2-AS1Q8N7Q2 184 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 ERGIC1Q969X5 290 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 MEGF10Q96KG7 1140 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 CIB1Q99828 191 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 GAL3ST1Q99999 423 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 OR10A2Q9H208 303 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 ZNF665Q9H7R5 613 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 TREM2Q9NZC2 230 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 N6AMT1Q9Y5N5 214 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 NPTNQ9Y639 398 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 CACNG2Q9Y698 323 aa11.33□□□□□ -0.6
CLK3-213ENST00000563842 A0A1B0GWJ7 208 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 ISPDA4D126 451 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 SLC22A31A6NKX4 558 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 LRRC30A6NM36 301 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 TBX1O43435 398 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 PRKYO43930 277 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 GMDSO60547 372 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 ALOX5APP20292 161 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 OPRL1P41146 370 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 NAA10P41227 235 aaPredicted RBP11.32□□□□□ -0.6
CLK3-213ENST00000563842 LMO4P61968 165 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 GLYATL3Q5SZD4 288 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 NXNL2Q5VZ03 156 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 C12orf73Q69YU5 71 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 DEGS2Q6QHC5 323 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 MEPCEQ7L2J0 689 aaKnown RBP11.32□□□□□ -0.6
CLK3-213ENST00000563842 KRT77Q7Z794 578 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 GID4Q8IVV7 300 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 C1orf87Q8N0U7 546 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 TCEANCQ8N8B7 351 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 SPERTQ8NA61 448 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 BBS1Q8NFJ9 593 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 OR10AD1Q8NGE0 317 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 OR51F2Q8NH61 342 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 TMEM163Q8TC26 289 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 SPSB4Q96A44 273 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 PGAM5Q96HS1 289 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 MNTQ99583 582 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 SOX7Q9BT81 388 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 RGCCQ9H4X1 137 aa11.32□□□□□ -0.6
CLK3-213ENST00000563842 MRPL15Q9P015 296 aaKnown RBP11.32□□□□□ -0.6
CLK3-213ENST00000563842 TMEFF2Q9UIK5 374 aaPredicted RBP11.32□□□□□ -0.6
CLK3-213ENST00000563842 TRAV20A0A0B4J274 112 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.31□□□□□ -0.6
CLK3-213ENST00000563842 SAC3D1A6NKF1 404 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 PHYHO14832 338 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 WNT9BO14905 357 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 MLNRO43193 412 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 MSMBP08118 114 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 FAM157CP0CG43 387 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 SLC2A1P11166 492 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 IRF2P14316 349 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 ZNF121P58317 390 aaPredicted RBP11.31□□□□□ -0.6
CLK3-213ENST00000563842 OR8G1Q15617 311 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 ZNF181Q2M3W8 571 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 TMEM155Q4W5P6 130 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 SPRNQ5BIV9 151 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms