RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 MPPED2Q15777 294 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 SPATS1Q496A3 300 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 ZNF770Q6IQ21 691 aaPredicted RBP8.55□□□□□ -1.04
LDLR-214ENST00000560628 RPL13AP3Q6NVV1 102 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 RASSF6Q6ZTQ3 369 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 SPATC1Q76KD6 591 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 DCXRQ7Z4W1 244 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 C1orf87Q8N0U7 546 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 FITM2Q8N6M3 262 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 OR4Q3Q8NH05 313 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 OR2AE1Q8NHA4 323 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 NEIL1Q96FI4 390 aaPredicted RBP8.55□□□□□ -1.04
LDLR-214ENST00000560628 NTN4Q9HB63 628 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 ARMC1Q9NVT9 282 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 KCNG2Q9UJ96 466 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 LRCH1Q9Y2L9 728 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 A0A1B0GWJ7 208 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 IGHV4-38-2P0DP08 117 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 SLC2A1P11166 492 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 FMO3P31513 532 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 PITPNBP48739 271 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 COMPP49747 757 aaPredicted RBP8.54□□□□□ -1.04
LDLR-214ENST00000560628 PAX2Q02962 417 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 BAMBIQ13145 260 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 MICAQ29983 383 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 ZNF181Q2M3W8 571 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 ZNF404Q494X3 552 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 GLYATL3Q5SZD4 288 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 SFRP4Q6FHJ7 346 aaPredicted RBP8.54□□□□□ -1.04
LDLR-214ENST00000560628 OR2T5Q6IEZ7 315 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 BTNL3Q6UXE8 466 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 DOK3Q7L591 496 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 DHFR2Q86XF0 187 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 LNX2Q8N448 690 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 LINC00471Q8N535 108 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 OR8B3Q8NGG8 313 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 OR11L1Q8NGX0 322 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 OR2T29Q8NH02 315 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 RAB40AQ8WXH6 277 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 OTULINQ96BN8 352 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 PLEKHA8Q96JA3 519 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 ZNF48Q96MX3 618 aaPredicted RBP8.54□□□□□ -1.04
LDLR-214ENST00000560628 OR8B2Q96RD0 313 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 CCT8L2Q96SF2 557 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 COPS4Q9BT78 406 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 MS4A7Q9GZW8 240 aaPredicted RBP8.54□□□□□ -1.04
LDLR-214ENST00000560628 SAMHD1Q9Y3Z3 626 aaKnown RBP8.54□□□□□ -1.04
LDLR-214ENST00000560628 COMMD3-BMI1R4GMX3 469 aa8.54□□□□□ -1.04
LDLR-214ENST00000560628 IGHV2-70DA0A0C4DH43 119 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 KIR2DS1A0A191URI9 304 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 GRPP07492 148 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 SPI1P17947 270 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 CD200P41217 278 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 MAGEA2P43356 314 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 GATA4P43694 442 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 ENTPD1P49961 510 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 RAD23AP54725 363 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 TRIM25Q14258 630 aaKnown RBP8.53□□□□□ -1.04
LDLR-214ENST00000560628 FAM98BQ52LJ0 330 aaKnown RBP8.53□□□□□ -1.04
LDLR-214ENST00000560628 AWAT1Q58HT5 328 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 WDR25Q64LD2 544 aaPredicted RBP8.53□□□□□ -1.04
LDLR-214ENST00000560628 DRAM2Q6UX65 266 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 LRRN1Q6UXK5 716 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 NLRC3Q7RTR2 1065 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 CELF2-AS1Q8N7Q2 184 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 OR2T33Q8NG76 320 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 OR6K6Q8NGW6 343 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 Q8TCH9 128 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 TAF15Q92804 592 aaKnown RBP eCLIP8.53□□□□□ -1.04
LDLR-214ENST00000560628 SLAMF6Q96DU3 332 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 NUDT16L1Q9BRJ7 211 aaKnown RBP8.53□□□□□ -1.04
LDLR-214ENST00000560628 NMNAT2Q9BZQ4 307 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 MAGIXQ9H6Y5 334 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 REEP1Q9H902 201 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 MED20Q9H944 212 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 FN3KRPQ9HA64 309 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 RNF7Q9UBF6 113 aa8.53□□□□□ -1.04
LDLR-214ENST00000560628 DNAJC9-AS1A6NH13 148 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 FAM183AA6NL82 134 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 C3orf80F5H4A9 247 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 TBX1O43435 398 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 GMDSO60547 372 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 T-ENOLP0DO92 83 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 EGR1P18146 543 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 CPT2P23786 658 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 PRTN3P24158 256 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 OTX1P32242 354 aaPredicted RBP8.52□□□□□ -1.05
LDLR-214ENST00000560628 SLC25A1P53007 311 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 POU4F2Q12837 409 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 EIF2B1Q14232 305 aaKnown RBP8.52□□□□□ -1.05
LDLR-214ENST00000560628 TUSC1Q2TAM9 212 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 LCN8Q6JVE9 175 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 ZNF841Q6ZN19 808 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 DCDC5Q6ZRR9 648 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 ZNF826PQ6ZT77 177 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 ARHGAP24Q8N264 748 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 PARP8Q8N3A8 854 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 IQCF1Q8N6M8 205 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 OR10G2Q8NGC3 310 aa8.52□□□□□ -1.05
LDLR-214ENST00000560628 OR56B2PQ8NGI1 322 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms