RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NUP188Q5SRE5 1749 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SLIT2O94813 1529 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PTPRJQ12913 1337 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SCN7AQ01118 1682 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ALS2Q96Q42 1657 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 A0A1B0GVI7 797 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 A0A1B0GW55 424 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CIB4A0PJX0 185 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 WASHC1A8K0Z3 465 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 A8MUA0 341 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 AIPO00170 330 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 KCNK1O00180 336 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CDC7O00311 574 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 NME4O00746 187 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ORC5O43913 435 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CST8O60676 142 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DPM1O60762 260 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PTBP3O95758 552 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 GUCA1CO95843 209 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DHFRP00374 187 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 TNNC2P02585 160 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 S100A9P06702 114 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 FBP1P09467 338 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ACSM4P0C7M7 580 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 OR56A5P0C7T3 313 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DUX4L2P0CJ85 424 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DUX4L3P0CJ86 424 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DUX4L5P0CJ88 424 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DUX4L6P0CJ89 424 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DUX4L7P0CJ90 424 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 HSMCR30P0CW71 290 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 IFI30P13284 250 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 POU2F1P14859 743 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PGAM1P18669 254 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 RAB4AP20338 218 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PSMB9P28065 219 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CD86P42081 329 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CCT3P49368 545 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 LHX2P50458 406 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PRMT2P55345 433 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 YBEYP58557 167 aaPredicted RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 KRTAP12-4P60329 112 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SPCS3P61009 180 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 NCS1P62166 190 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 RPS6P62753 249 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ERVK-8P63133 956 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 UBE2IP63279 158 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 TFAMQ00059 246 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 EMX2Q04743 252 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CSTF1Q05048 431 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 FGL1Q08830 312 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ELP6Q0PNE2 266 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 EXOSC2Q13868 293 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DMC1Q14565 340 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 NCF4Q15080 339 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ZMYND11Q15326 602 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SF3A2Q15428 464 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SGCAQ16586 387 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 GUCA2BQ16661 112 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 IMPG1Q17R60 797 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 AGKQ53H12 422 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SPANXN3Q5MJ09 141 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PDZK1Q5T2W1 519 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 HACD4Q5VWC8 232 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 RAET1GQ6H3X3 334 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 GLYATQ6IB77 296 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PYHIN1Q6K0P9 492 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 C3orf33Q6P1S2 294 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 TBPL2Q6SJ96 375 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 PLET1Q6UQ28 207 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 KDELC1Q6UW63 502 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 TMEM107Q6UX40 140 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DLEU7Q6UYE1 221 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 HSDL2Q6YN16 418 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 RTL4Q6ZR62 310 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 BNIPLQ7Z465 357 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SNX20Q7Z614 316 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SKA3Q8IX90 412 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 LRRC17Q8N6Y2 441 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DNAAF3Q8N9W5 541 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 TTC29Q8NA56 475 aaPredicted RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 COLGALT1Q8NBJ5 622 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 FBXL13Q8NEE6 735 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 OR52K2Q8NGK3 314 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 OR2A12Q8NGT7 310 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 OR2T4Q8NH00 348 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 OR4A16Q8NH70 328 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 OR5K1Q8NHB7 308 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ITFG1Q8TB96 612 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 RAET1EQ8TD07 263 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 RNASE8Q8TDE3 154 aaKnown RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF431Q8TF32 576 aaPredicted RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 TCEAL3Q969E4 200 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 TMBIM1Q969X1 311 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CPNE4Q96A23 557 aaPredicted RBP2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CREB3L1Q96BA8 519 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 CCDC126Q96EE4 140 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 DTD2Q96FN9 168 aa2.22□□□□□ -2.05
VPS13C-208ENST00000559119 MRPL48Q96GC5 212 aaKnown RBP2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms