RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	BCKDHB	P21953	392 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	ADH6	P28332	368 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	HRH1	P35367	487 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	DLST	P36957	453 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	FOXL2	P58012	376 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	GABRE	P78334	506 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	TAF13	Q15543	124 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	HYAL4	Q2M3T9	481 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	SPEM1	Q8N4L4	309 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	GVQW1	Q8N7I0	195 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	OR2M3	Q8NG83	312 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	KCNG3	Q8TAE7	436 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	OR51E1	Q8TCB6	317 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	PPP1R1C	Q8WVI7	109 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	CMBL	Q96DG6	245 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	VRK1	Q99986	396 aa	Predicted RBP	11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	TMEM185B	Q9H7F4	350 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	MYOT	Q9UBF9	498 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	MRPS28	Q9Y2Q9	187 aa	Known RBP	11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	HRH3	Q9Y5N1	445 aa		11.96	□□□□□ -0.49
SHMT2-222	ENST00000555774	ADAMTS9	Q9P2N4	1935 aa		11.96	□□□□□ -0.5
SHMT2-222	ENST00000555774	SHISA8	B8ZZ34	492 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	SSX5	O60225	188 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	MYF5	P13349	255 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	PRKACB	P22694	351 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	EIF1	P41567	113 aa	Known RBP	11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	STARD6	P59095	220 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	VAX1	Q5SQQ9	334 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	TFAP2E	Q6VUC0	442 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	MOB3C	Q70IA8	216 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	DOK3	Q7L591	496 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	HOGA1	Q86XE5	327 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	ARRDC1	Q8N5I2	433 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	SLC38A9	Q8NBW4	561 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	THAP6	Q8TBB0	222 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	ST8SIA4	Q92187	359 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	DMRTA2	Q96SC8	542 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	SELENOI	Q9C0D9	397 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	LPAR5	Q9H1C0	372 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	RARRES3	Q9UL19	164 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	HDGFL3	Q9Y3E1	203 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	DNAH14	Q0VDD8	3507 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	RNF222	A6NCQ9	220 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	EFS	O43281	561 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	DCN	P07585	359 aa	Known RBP	11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	GNB3	P16520	340 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	CBX5	P45973	191 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	STAR	P49675	285 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	PRKX	P51817	358 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	GRB2	P62993	217 aa	Known RBP	11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	HIST3H3	Q16695	136 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	ZNF385C	Q66K41	422 aa	Predicted RBP	11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR52W1	Q6IF63	320 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	GLIPR1L1	Q6UWM5	242 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	ZNF574	Q6ZN55	896 aa	Predicted RBP	11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	NAA40	Q86UY6	237 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	ZNF101	Q8IZC7	436 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR5AS1	Q8N127	324 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR8B12	Q8NGG6	310 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	FBXW5	Q969U6	566 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	SHD	Q96IW2	340 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR6C1	Q96RD1	312 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	CDC6	Q99741	560 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	SLC26A1	Q9H2B4	701 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	LDAH	Q9H6V9	325 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	SEC61A2	Q9H9S3	476 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	KCNK7	Q9Y2U2	307 aa		11.95	□□□□□ -0.5
SHMT2-222	ENST00000555774	DBX1	A6NMT0	343 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	CEACAM18	A8MTB9	384 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	FREM3	P0C091	2139 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	HIST1H1D	P16402	221 aa	Known RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	SHB	Q15464	509 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	FAM69B	Q5VUD6	431 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	TDH	Q8IZJ6	230 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	FADS6	Q8N9I5	356 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR10G3	Q8NGC4	313 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR4K15	Q8NH41	348 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	SCGB3A2	Q96PL1	93 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	DUSP23	Q9BVJ7	150 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	GPR160	Q9UJ42	338 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	KIF26B	Q2KJY2	2108 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	FER1L5	A0AVI2	2057 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774		A0A0B4J2A0	478 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR2AT4	A6NND4	320 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	CCS	O14618	274 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	TLX3	O43711	291 aa	Predicted RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	CDC14B	O60729	498 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	CTSS	P25774	331 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	CX3CR1	P49238	355 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	LUM	P51884	338 aa	Predicted RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	ATP1B3	P54709	279 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	ZNF121	P58317	390 aa	Predicted RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	CYCS	P99999	105 aa	Known RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	PXDC1	Q5TGL8	231 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	TMEM17	Q86X19	198 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	STPG2	Q8N412	459 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	INO80E	Q8NBZ0	244 aa	Predicted RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR56B1	Q8NGI3	324 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms