RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 KIR3DL3Q8N743 410 aa9.91□□□□□ -0.82
SRP54-203ENST00000553544 SLC37A3Q8NCC5 494 aa9.91□□□□□ -0.82
SRP54-203ENST00000553544 OR5L1Q8NGL2 311 aa9.91□□□□□ -0.82
SRP54-203ENST00000553544 OR4F5Q8NH21 305 aa9.91□□□□□ -0.82
SRP54-203ENST00000553544 ZNRF4Q8WWF5 429 aa9.91□□□□□ -0.82
SRP54-203ENST00000553544 APOBEC3DQ96AK3 386 aaPredicted RBP9.91□□□□□ -0.82
SRP54-203ENST00000553544 CHID1Q9BWS9 393 aa9.91□□□□□ -0.82
SRP54-203ENST00000553544 CADM1Q9BY67 442 aaKnown RBP9.91□□□□□ -0.82
SRP54-203ENST00000553544 PATZ1Q9HBE1 687 aaKnown RBP9.91□□□□□ -0.82
SRP54-203ENST00000553544 KCNG2Q9UJ96 466 aa9.91□□□□□ -0.82
SRP54-203ENST00000553544 U3KQV3 271 aa9.91□□□□□ -0.82
SRP54-203ENST00000553544 TCRBV3S1A0A5B6 114 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 TNFAIP6P98066 277 aaPredicted RBP9.9□□□□□ -0.82
SRP54-203ENST00000553544 PAX8Q06710 450 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 ECH1Q13011 328 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 HLXQ14774 488 aaPredicted RBP9.9□□□□□ -0.82
SRP54-203ENST00000553544 FBLN7Q53RD9 439 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 C9orf139Q6ZV77 190 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.9□□□□□ -0.82
SRP54-203ENST00000553544 LRRC28Q86X40 367 aaPredicted RBP9.9□□□□□ -0.82
SRP54-203ENST00000553544 LINC00346Q8IVM7 164 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 CYB561A3Q8NBI2 242 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 OR10S1Q8NGN2 331 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 OR4Q3Q8NH05 313 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 CANT1Q8WVQ1 401 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 DNAJC9Q8WXX5 260 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 MAP6Q96JE9 813 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 ATF6BQ99941 703 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 TSSK6Q9BXA6 273 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 TEX12Q9BXU0 123 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 NMNAT2Q9BZQ4 307 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 ZNF556Q9HAH1 456 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 IL19Q9UHD0 177 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 BAIAP2Q9UQB8 552 aa9.9□□□□□ -0.82
SRP54-203ENST00000553544 A0A1B0GWJ7 208 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 FAM181BA6NEQ2 426 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 IGHV2-70P01814 119 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 ACSM4P0C7M7 580 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 PPIAL4GP0DN37 164 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 PSKH1P11801 424 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 PYCR1P32322 319 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 CD80P33681 288 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 SLC25A1P53007 311 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 CBX1P83916 185 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 PCK2Q16822 640 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 TMEM155Q4W5P6 130 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 OLFML2AQ68BL7 652 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 BRICD5Q6PL45 260 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 LRRN1Q6UXK5 716 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 NAA40Q86UY6 237 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 ZNF283Q8N7M2 679 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 OR2T33Q8NG76 320 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 OR8G5Q8NG78 346 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 OR2Z1Q8NG97 314 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 OR10G2Q8NGC3 310 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 OR2AJ1Q8NGZ0 328 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 OR2T4Q8NH00 348 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 WFDC12Q8WWY7 111 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 UBE2FQ969M7 185 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 ZDHHC16Q969W1 377 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 RAB3IPQ96QF0 476 aaPredicted RBP9.89□□□□□ -0.83
SRP54-203ENST00000553544 FEVQ99581 238 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 PITX2Q99697 317 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 CITED1Q99966 193 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 NIPSNAP1Q9BPW8 284 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 CDADC1Q9BWV3 514 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 TMEM106BQ9NUM4 274 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 TBC1D23Q9NUY8 699 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 DCAF16Q9NXF7 216 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 PTTG3PQ9NZH4 202 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 DNAJB9Q9UBS3 223 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 OR5V1Q9UGF6 321 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 ENOPH1Q9UHY7 261 aa9.89□□□□□ -0.83
SRP54-203ENST00000553544 IGHV3OR16-10A0A075B7F0 116 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 IQCF6A8MYZ5 107 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 F5H5K5 113 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 HOXA3O43365 443 aaPredicted RBP9.88□□□□□ -0.83
SRP54-203ENST00000553544 FKBP6O75344 327 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 ALX3O95076 343 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 SOX14O95416 240 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 HLA-DQA2P01906 255 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 IGHV4-38-2P0DP08 117 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 ANXA8P13928 327 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 ZNF823P16415 610 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 TNFRSF1AP19438 455 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 TNFSF4P23510 183 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 OTX1P32242 354 aaPredicted RBP9.88□□□□□ -0.83
SRP54-203ENST00000553544 RPS27P42677 84 aaKnown RBP9.88□□□□□ -0.83
SRP54-203ENST00000553544 RAG2P55895 527 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 HNRNPA0Q13151 305 aaKnown RBP9.88□□□□□ -0.83
SRP54-203ENST00000553544 CRMP1Q14194 572 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 ESCO2Q56NI9 601 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 TEX30Q5JUR7 227 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 OR2T2Q6IF00 324 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 LYPD4Q6UWN0 246 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 BTNL3Q6UXE8 466 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 TMEM179BQ7Z7N9 219 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 PARP8Q8N3A8 854 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 PROKR2Q8NFJ6 384 aa9.88□□□□□ -0.83
SRP54-203ENST00000553544 OR51L1Q8NGJ5 315 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms