RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SLC25A21Q9BQT8 299 aaPredicted RBP13.43□□□□□ -0.26
CUX1-214ENST00000550008 EDEM2Q9BV94 578 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 IGHV5-10-1A0A0J9YXX1 117 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 TRIM64A6NGJ6 449 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 CSF2RBP32927 897 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 CAMLGP49069 296 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 OR9K2Q8NGE7 335 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 MARCH1Q8TCQ1 289 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 NOTCH4Q99466 2003 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 VRK1Q99986 396 aaPredicted RBP13.43□□□□□ -0.26
CUX1-214ENST00000550008 KCNIP1Q9NZI2 227 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 ZNF223Q9UK11 482 aaPredicted RBP13.43□□□□□ -0.26
CUX1-214ENST00000550008 ICAM5Q9UMF0 924 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 HDGFL3Q9Y3E1 203 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 CBR3O75828 277 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 GCH1P30793 250 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 IDH3GP51553 393 aaPredicted RBP13.42□□□□□ -0.26
CUX1-214ENST00000550008 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.42□□□□□ -0.26
CUX1-214ENST00000550008 NAXDQ8IW45 347 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 CMTM1Q8IZ96 169 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 RNF128Q8TEB7 428 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 ZNF721Q8TF20 911 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 LUZP4Q9P127 313 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 DNAJB11Q9UBS4 358 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 THSD7BQ9C0I4 1608 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 SHISA7A6NL88 538 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 TRAPPC2P0DI81 140 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 TRAPPC2BP0DI82 140 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 DUSP1P28562 367 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 DYRK1AQ13627 763 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 SLC25A30Q5SVS4 291 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 NOXO1Q8NFA2 376 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 ZNF286AQ9HBT8 521 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 C5orf49A4QMS7 147 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 F8W036 122 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 SPRY1O43609 319 aaPredicted RBP13.42□□□□□ -0.26
CUX1-214ENST00000550008 TK1P04183 234 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 S100A11P31949 105 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 TAS2R46P59540 309 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 BLOC1S1P78537 153 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 FOXK1P85037 733 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 USF2Q15853 346 aaPredicted RBP13.42□□□□□ -0.26
CUX1-214ENST00000550008 ZFAND1Q8TCF1 268 aa13.42□□□□□ -0.26
CUX1-214ENST00000550008 ZNF501Q96CX3 271 aaPredicted RBP13.42□□□□□ -0.26
CUX1-214ENST00000550008 PARP12Q9H0J9 701 aaKnown RBP13.42□□□□□ -0.26
CUX1-214ENST00000550008 A0A1B0GTQ1 180 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 KLRC4-KLRK1H3BQV0 150 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 XRCC3O43542 346 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 SLC34A2O95436 690 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 TMIGD3P0DMS9 266 aaPredicted RBP13.41□□□□□ -0.26
CUX1-214ENST00000550008 IAH1Q2TAA2 248 aaPredicted RBP13.41□□□□□ -0.26
CUX1-214ENST00000550008 COL13A1Q5TAT6 717 aaPredicted RBP13.41□□□□□ -0.26
CUX1-214ENST00000550008 OR52N4Q8NGI2 321 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 SMCO3A2RU48 225 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 OR5H15A6NDH6 313 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 GRPP07492 148 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 CHRM2P08172 466 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 SHBQ15464 509 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 CLVS2Q5SYC1 327 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 C20orf196Q8IYI0 205 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 OR51F2Q8NH61 342 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 SCGB1C1Q8TD33 95 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 YIPF5Q969M3 257 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 SCARF2Q96GP6 870 aaPredicted RBP13.41□□□□□ -0.26
CUX1-214ENST00000550008 ST3GAL2Q16842 350 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 CCDC71LQ8N9Z2 235 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 RDH5Q92781 318 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 MCHR2Q969V1 340 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 LIN37Q96GY3 246 aaPredicted RBP13.41□□□□□ -0.26
CUX1-214ENST00000550008 SLCO5A1Q9H2Y9 848 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 HAO2Q9NYQ3 351 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 WASF3Q9UPY6 502 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 OR2M5A3KFT3 312 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 TPOP07202 933 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 SUMO3P55854 103 aaPredicted RBP13.41□□□□□ -0.26
CUX1-214ENST00000550008 AKR1C1Q04828 323 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 RBM39Q14498 530 aaKnown RBP13.41□□□□□ -0.26
CUX1-214ENST00000550008 BRICD5Q6PL45 260 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 AMELYQ99218 206 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 ZNF416Q9BWM5 594 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 GLS2Q9UI32 602 aa13.41□□□□□ -0.26
CUX1-214ENST00000550008 PTPRDP23468 1912 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.4□□□□□ -0.26
CUX1-214ENST00000550008 MCRIP1C9JLW8 97 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 TGFBR3LH3BV60 316 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 HS3ST1O14792 307 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 PMS2P2O95744 297 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 RBP2P50120 134 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 MFGE8Q08431 387 aaPredicted RBP13.4□□□□□ -0.26
CUX1-214ENST00000550008 ACER2Q5QJU3 275 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 SPATA46Q5T0L3 261 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 CREB3L2Q70SY1 520 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 RELL2Q8NC24 303 aaPredicted RBP13.4□□□□□ -0.26
CUX1-214ENST00000550008 OR1S1Q8NH92 325 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 GLYATL2Q8WU03 294 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 UCN2Q96RP3 112 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 FOXJ3Q9UPW0 622 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 D6RAR5 112 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 CCL3P10147 92 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 SPEM2Q0P670 501 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms