RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RNF148Q8N7C7 305 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 BHLHE23Q8NDY6 225 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 OR52E2Q8NGJ4 325 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 OR4K13Q8NH42 304 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 RNF141Q8WVD5 230 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 RAB40AQ8WXH6 277 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 RCC1LQ96I51 464 aaKnown RBP7.07□□□□□ -1.28
USP28-215ENST00000545608 NMNAT3Q96T66 252 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 MS4A7Q9GZW8 240 aaPredicted RBP7.07□□□□□ -1.28
USP28-215ENST00000545608 HDHD2Q9H0R4 259 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 DCAF13Q9NV06 445 aaKnown RBP7.07□□□□□ -1.28
USP28-215ENST00000545608 TMEM100Q9NV29 134 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 ETAA1Q9NY74 926 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 MIOXQ9UGB7 285 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 LRCH1Q9Y2L9 728 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 MGAM2Q2M2H8 2515 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 IGHV2-70DA0A0C4DH43 119 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 KIR2DS1A0A191URI9 304 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 MDFIC2A0A1B0GVS7 189 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 A0A1B0GWJ7 208 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 F5H5K5 113 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 ARPC3O15145 178 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 PLATP00750 562 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 RNASE1P07998 156 aaKnown RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 ACSM4P0C7M7 580 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 HIST1H1CP16403 213 aaKnown RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 CPT2P23786 658 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 FPR3P25089 353 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 GNB2P62879 340 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 SUMO1P63165 101 aaKnown RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 HOXA4Q00056 320 aaPredicted RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 DYNC1I2Q13409 638 aaKnown RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 GK2Q14410 553 aaPredicted RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 ZNF404Q494X3 552 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 PRR31Q5SQ13 230 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 FOXB2Q5VYV0 432 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 SLC18B1Q6NT16 456 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 PGM2L1Q6PCE3 622 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 DNM1P34Q6PK57 102 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 BTNL3Q6UXE8 466 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 TREML4Q6UXN2 200 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 CFAP77Q6ZQR2 320 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 Q6ZS46 218 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 C9orf139Q6ZV77 190 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 C19orf18Q8NEA5 215 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 SLC26A10Q8NG04 563 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 FBLIM1Q8WUP2 373 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 SLCO4A1Q96BD0 722 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 UPRTQ96BW1 309 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 NEIL1Q96FI4 390 aaPredicted RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 PITX2Q99697 317 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 HCAR1Q9BXC0 346 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 MYLK2Q9H1R3 596 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 VCXQ9H320 206 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 OR52D1Q9H346 318 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 FN3KQ9H479 309 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 ZNF696Q9H7X3 374 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 UNKLQ9H9P5 680 aaKnown RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 ZMAT3Q9HA38 289 aaKnown RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 PNRC2Q9NPJ4 139 aaKnown RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 RPRD1BQ9NQG5 326 aaKnown RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 SAMD4AQ9UPU9 718 aaKnown RBP7.06□□□□□ -1.28
USP28-215ENST00000545608 V9GYQ6 96 aa7.06□□□□□ -1.28
USP28-215ENST00000545608 TRAV40A0A0B4J280 105 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 C5orf63A6NC05 138 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 OR6C68A6NDL8 312 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 LRRC30A6NM36 301 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 CLDN34H7C241 214 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 PRODHO43272 600 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 FAM20BO75063 409 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 GADD45GO95257 159 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 FSTL3O95633 263 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 RENP00797 406 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 LCATP04180 440 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 SEMG1P04279 462 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 RPSAP08865 295 aaKnown RBP7.05□□□□□ -1.28
USP28-215ENST00000545608 PPIAL4GP0DN37 164 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 ANOS1P23352 680 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 SLC6A6P31641 620 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 GGT2P36268 569 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 CD200P41217 278 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 GATA4P43694 442 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 MTNR1AP48039 350 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 PITPNBP48739 271 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 RAD23AP54725 363 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 SPIBQ01892 262 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 TRAP1Q12931 704 aaKnown RBP7.05□□□□□ -1.28
USP28-215ENST00000545608 KRT72Q14CN4 511 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 MPPED2Q15777 294 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 TM4SF20Q53R12 229 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 CLEC12AQ5QGZ9 265 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 PRAMEF6Q5VXH4 476 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 WDR25Q64LD2 544 aaPredicted RBP7.05□□□□□ -1.28
USP28-215ENST00000545608 ZNF841Q6ZN19 808 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 ZBTB46Q86UZ6 589 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 C1orf87Q8N0U7 546 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 FITM2Q8N6M3 262 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 SDR9C7Q8NEX9 313 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 OR8B3Q8NGG8 313 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 FANK1Q8TC84 345 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms