RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 NUFIP1Q9UHK0 495 aaKnown RBP8.27□□□□□ -1.09
YBX3-215ENST00000544504 OR52A1Q9UKL2 312 aa8.27□□□□□ -1.09
YBX3-215ENST00000544504 STUB1Q9UNE7 303 aa8.27□□□□□ -1.09
YBX3-215ENST00000544504 GTF2A1LQ9UNN4 478 aa8.27□□□□□ -1.09
YBX3-215ENST00000544504 GSTK1Q9Y2Q3 226 aa8.27□□□□□ -1.09
YBX3-215ENST00000544504 ZNF281Q9Y2X9 895 aa8.27□□□□□ -1.09
YBX3-215ENST00000544504 NSD1Q96L73 2696 aaPredicted RBP8.27□□□□□ -1.09
YBX3-215ENST00000544504 NCOA6Q14686 2063 aaPredicted RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 CACNA1CQ13936 2221 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 FBN1P35555 2871 aaKnown RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 A0A0U1RQV5 110 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 DPPA5A6NC42 116 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 CCDC160A6NGH7 325 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 OR4C45A6NMZ5 311 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 E9PI62 339 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 F5H5K5 113 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 MAGEB4O15481 346 aaPredicted RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 AIREO43918 545 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 SRSF10O75494 262 aaKnown RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 RGS9O75916 674 aaPredicted RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 LALBAP00709 142 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 IGKV3-15P01624 115 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 ISG15P05161 165 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 CD2P06729 351 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 ANXA2P07355 339 aaKnown RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 ACSM4P0C7M7 580 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 PATE4P0C8F1 98 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 ZNF14P17017 642 aaPredicted RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 ACHEP22303 614 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 APEX1P27695 318 aaKnown RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 TGFBR2P37173 567 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 PSMB10P40306 273 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 GTF2A1P52655 376 aaPredicted RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 ZNF121P58317 390 aaPredicted RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 SSX1Q16384 188 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 KRTAP27-1Q3LI81 207 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 GPR107Q5VW38 600 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 BIVMQ86UB2 503 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 TMEM200AQ86VY9 491 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 CLVS1Q8IUQ0 354 aaPredicted RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 ELMOD2Q8IZ81 293 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 WDR31Q8NA23 367 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 SLC30A7Q8NEW0 376 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 OR5L1Q8NGL2 311 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 FGFBP3Q8TAT2 258 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 GPR148Q8TDV2 347 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 AKAP1Q92667 903 aaKnown RBP eCLIP8.26□□□□□ -1.09
YBX3-215ENST00000544504 APOBEC3DQ96AK3 386 aaPredicted RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 TMIGD2Q96BF3 282 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 DGCR14Q96DF8 476 aaKnown RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 KCNS3Q9BQ31 491 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 FUNDC2Q9BWH2 189 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 PBOV1Q9GZY1 135 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 OPA3Q9H6K4 179 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 FAM206AQ9NX38 181 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 FRRS1LQ9P0K9 344 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 CRNNQ9UBG3 495 aaPredicted RBP8.26□□□□□ -1.09
YBX3-215ENST00000544504 NDRG3Q9UGV2 375 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 ENPP5Q9UJA9 477 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 HHLA2Q9UM44 414 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 GRIP1Q9Y3R0 1128 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 SPEF1Q9Y4P9 236 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 SLC25A15Q9Y619 301 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 ACANP16112 2415 aa8.26□□□□□ -1.09
YBX3-215ENST00000544504 PNMA8CA0A1B0GUJ8 204 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 A0A1B0GVI7 797 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 TRDV1A0A1B0GX56 115 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 C5orf49A4QMS7 147 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 A6NHS1 94 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 FAM90A27PA6NNH2 459 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 ZNF879B4DU55 563 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 SLC22A1O15245 554 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 XRCC2O43543 280 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 ICMTO60725 284 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 MTRF1O75570 445 aaKnown RBP8.25□□□□□ -1.09
YBX3-215ENST00000544504 ARL6IP5O75915 188 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 ZFPL1O95159 310 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 GABARAPO95166 117 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 IGLV1-44P01699 117 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 RAF1P04049 648 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 LCATP04180 440 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 IGFBP2P18065 325 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 PCSK6P29122 969 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 FGF9P31371 208 aaPredicted RBP8.25□□□□□ -1.09
YBX3-215ENST00000544504 IDH3GP51553 393 aaPredicted RBP8.25□□□□□ -1.09
YBX3-215ENST00000544504 FAM27E3Q08E93 113 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 MALLQ13021 153 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 TSC22D1Q15714 1073 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 WDR38Q5JTN6 314 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 CD200R1LQ6Q8B3 271 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 NCCRP1Q6ZVX7 275 aaPredicted RBP8.25□□□□□ -1.09
YBX3-215ENST00000544504 FAM57BQ71RH2 274 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 ZFP41Q8N8Y5 198 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 CPEB3Q8NE35 698 aaKnown RBP8.25□□□□□ -1.09
YBX3-215ENST00000544504 POM121L2Q96KW2 1035 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 PGLYRP3Q96LB9 341 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 TMED9Q9BVK6 235 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 C1QTNF5Q9BXJ0 243 aa8.25□□□□□ -1.09
YBX3-215ENST00000544504 EXOSC4Q9NPD3 245 aaKnown RBP8.25□□□□□ -1.09
YBX3-215ENST00000544504 G6PC2Q9NQR9 355 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms