RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 COPS4Q9BT78 406 aa10.98□□□□□ -0.65
RTN3-212ENST00000543123 ADAT1Q9BUB4 502 aaKnown RBP10.98□□□□□ -0.65
RTN3-212ENST00000543123 MUC13Q9H3R2 512 aa10.98□□□□□ -0.65
RTN3-212ENST00000543123 EGLN3Q9H6Z9 239 aa10.98□□□□□ -0.65
RTN3-212ENST00000543123 PNRC2Q9NPJ4 139 aaKnown RBP10.98□□□□□ -0.65
RTN3-212ENST00000543123 MRPL22Q9NWU5 206 aaKnown RBP10.98□□□□□ -0.65
RTN3-212ENST00000543123 IL20Q9NYY1 176 aa10.98□□□□□ -0.65
RTN3-212ENST00000543123 MRPL15Q9P015 296 aaKnown RBP10.98□□□□□ -0.65
RTN3-212ENST00000543123 ACTR3BQ9P1U1 418 aa10.98□□□□□ -0.65
RTN3-212ENST00000543123 LYVE1Q9Y5Y7 322 aa10.98□□□□□ -0.65
RTN3-212ENST00000543123 IGHV3-64DA0A0J9YX35 117 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 GGT3PA6NGU5 568 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 CD300LBA8K4G0 201 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 BHLHE40O14503 412 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 ENSAO43768 121 aaKnown RBP10.97□□□□□ -0.65
RTN3-212ENST00000543123 FAM20BO75063 409 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 IFNGP01579 166 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 RNASE1P07998 156 aaKnown RBP10.97□□□□□ -0.65
RTN3-212ENST00000543123 FMO3P31513 532 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 PYCR1P32322 319 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 BPIFB3P59826 476 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 PAX2Q02962 417 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 CD276Q5ZPR3 534 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 SHISA2Q6UWI4 295 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 CYB561A3Q8NBI2 242 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 OR2T33Q8NG76 320 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 OR9Q2Q8NGE9 314 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 MMADHCQ9H3L0 296 aaPredicted RBP10.97□□□□□ -0.65
RTN3-212ENST00000543123 MAGIXQ9H6Y5 334 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 SP140LQ9H930 580 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 ARL8BQ9NVJ2 186 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 RNF7Q9UBF6 113 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 COMMD3-BMI1R4GMX3 469 aa10.97□□□□□ -0.65
RTN3-212ENST00000543123 TRAV40A0A0B4J280 105 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 KIR2DS1A0A191URI9 304 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 ZNF878C9JN71 531 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 NDUFA2O43678 99 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 SPARCP09486 303 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 CA6P23280 308 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 OTX1P32242 354 aaPredicted RBP10.96□□□□□ -0.65
RTN3-212ENST00000543123 MAGEA2P43356 314 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 SLC15A1P46059 708 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 ENTPD1P49961 510 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 GNGT1P63211 74 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 IL13RA1P78552 427 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 MAB21L1Q13394 359 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 CYP2R1Q6VVX0 501 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 DCXRQ7Z4W1 244 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 LNX2Q8N448 690 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 AQP11Q8NBQ7 271 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 SLC37A3Q8NCC5 494 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 TECTBQ96PL2 329 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 NUDT16L1Q9BRJ7 211 aaKnown RBP10.96□□□□□ -0.65
RTN3-212ENST00000543123 BTBD10Q9BSF8 475 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 ZNF747Q9BV97 191 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 REEP1Q9H902 201 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 UFSP2Q9NUQ7 469 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 C14orf119Q9NWQ9 140 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 ERVK-18Q9QC07 812 aa10.96□□□□□ -0.65
RTN3-212ENST00000543123 MGAM2Q2M2H8 2515 aa10.96□□□□□ -0.66
RTN3-212ENST00000543123 TRAV38-1A0A0B4J264 116 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 TVP23AA6NH52 213 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 RIIAD1A6NNX1 92 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 LGALS8O00214 317 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 XRCC2O43543 280 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 PTBP3O95758 552 aaKnown RBP10.95□□□□□ -0.66
RTN3-212ENST00000543123 PLATP00750 562 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 APOC1P02654 83 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 LIPFP07098 398 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 IGHV4-38-2P0DP08 117 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 ZNF3P17036 446 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 RBMXP38159 391 aaKnown RBP10.95□□□□□ -0.66
RTN3-212ENST00000543123 DDOSTP39656 456 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 PSMB10P40306 273 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 PMELP40967 661 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 SLC25A1P53007 311 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 PRSS12P56730 875 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 GRB2P62993 217 aaKnown RBP10.95□□□□□ -0.66
RTN3-212ENST00000543123 ZNF92Q03936 586 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 GK3PQ14409 553 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 SNAI3Q3KNW1 292 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 FAM98BQ52LJ0 330 aaKnown RBP10.95□□□□□ -0.66
RTN3-212ENST00000543123 GPR157Q5UAW9 335 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 PRAMEF6Q5VXH4 476 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 WDR25Q64LD2 544 aaPredicted RBP10.95□□□□□ -0.66
RTN3-212ENST00000543123 ZNF770Q6IQ21 691 aaPredicted RBP10.95□□□□□ -0.66
RTN3-212ENST00000543123 NAA40Q86UY6 237 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 BCL6BQ8N143 479 aaPredicted RBP10.95□□□□□ -0.66
RTN3-212ENST00000543123 OR6K6Q8NGW6 343 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 DACT3Q96B18 629 aaPredicted RBP10.95□□□□□ -0.66
RTN3-212ENST00000543123 SLAMF6Q96DU3 332 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 KCNJ15Q99712 375 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 TSSK6Q9BXA6 273 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 TOR3AQ9H497 397 aa10.95□□□□□ -0.66
RTN3-212ENST00000543123 SAMHD1Q9Y3Z3 626 aaKnown RBP10.95□□□□□ -0.66
RTN3-212ENST00000543123 A6NLC8 198 aa10.94□□□□□ -0.66
RTN3-212ENST00000543123 ANKRD30BLA7E2S9 258 aa10.94□□□□□ -0.66
RTN3-212ENST00000543123 GASTP01350 101 aa10.94□□□□□ -0.66
RTN3-212ENST00000543123 ATP6V1B2P21281 511 aa10.94□□□□□ -0.66
RTN3-212ENST00000543123 CFL1P23528 166 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms