RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TAF13Q15543 124 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 NXNL2Q5VZ03 156 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 TTC23Q5W5X9 447 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 USP51Q70EK9 711 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 NAA40Q86UY6 237 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 TCEANCQ8N8B7 351 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 SAP30LQ9HAJ7 183 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 ORC6Q9Y5N6 252 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 SETD2Q9BYW2 2564 aaPredicted RBP12.79□□□□□ -0.36
CPSF1-208ENST00000532560 CCDC160A6NGH7 325 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 LYNX1G3V0Z9 82 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 SPRY3O43610 288 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 TLX2O43763 284 aaPredicted RBP12.79□□□□□ -0.36
CPSF1-208ENST00000532560 RP2O75695 350 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 CD55P08174 381 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 LYNX1P0DP58 116 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 SELEP16581 610 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 OPRL1P41146 370 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 RAD23AP54725 363 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 ADARB1P78563 741 aaKnown RBP12.79□□□□□ -0.36
CPSF1-208ENST00000532560 MALLQ13021 153 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 CDK5R2Q13319 367 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 GK2Q14410 553 aaPredicted RBP12.79□□□□□ -0.36
CPSF1-208ENST00000532560 AADACL4Q5VUY2 407 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 SPATC1Q76KD6 591 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 SLC16A9Q7RTY1 509 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 GID4Q8IVV7 300 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 ZNF420Q8TAQ5 688 aaPredicted RBP12.79□□□□□ -0.36
CPSF1-208ENST00000532560 YIPF5Q969M3 257 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 AMELYQ99218 206 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 TEAD3Q99594 435 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 MSL2Q9HCI7 577 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 DECR2Q9NUI1 292 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 CEPT1Q9Y6K0 416 aa12.79□□□□□ -0.36
CPSF1-208ENST00000532560 ZANQ9Y493 2812 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 SLC22A31A6NKX4 558 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 IQCF6A8MYZ5 107 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 APOC1P02654 83 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 ALOX5APP20292 161 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 COL8A2P25067 703 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 HSD11B1P28845 292 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 CRYBB2P43320 205 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 CX3CR1P49238 355 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 PRKXP51817 358 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 RIPPLY3P57055 190 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 TSTQ16762 297 aaKnown RBP12.78□□□□□ -0.36
CPSF1-208ENST00000532560 TMEM249Q2WGJ8 235 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 SNAI3Q3KNW1 292 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 OR2T2Q6IF00 324 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 Q6ZR03 302 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 GPR141Q7Z602 305 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 ZNF283Q8N7M2 679 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 OR8G5Q8NG78 346 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 OR8J1Q8NGP2 316 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 ELMOD3Q96FG2 381 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 ZNF582Q96NG8 517 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-208ENST00000532560 IL4I1Q96RQ9 567 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 CNN2Q99439 309 aaKnown RBP12.78□□□□□ -0.36
CPSF1-208ENST00000532560 EGLN1Q9GZT9 426 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 OPA3Q9H6K4 179 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 KLHDC2Q9Y2U9 406 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 PCDHGB5Q9Y5G0 923 aa12.78□□□□□ -0.36
CPSF1-208ENST00000532560 CSPG4Q6UVK1 2322 aa12.77□□□□□ -0.36
CPSF1-208ENST00000532560 IGHV4-61A0A0C4DH41 118 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 IGHV1-69-2A0A0G2JMI3 117 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 A0A1B0GWJ7 208 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 E9PQ18 207 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 TACSTD2P09758 323 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 ANOS1P23352 680 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 TNFSF4P23510 183 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 TMEM33P57088 247 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 CDC42P60953 191 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 IL18R1Q13478 541 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 RBM48Q5RL73 367 aaKnown RBP12.77□□□□□ -0.37
CPSF1-208ENST00000532560 PGAP1Q75T13 922 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 MEPCEQ7L2J0 689 aaKnown RBP12.77□□□□□ -0.37
CPSF1-208ENST00000532560 MRPL21Q7Z2W9 205 aaKnown RBP12.77□□□□□ -0.37
CPSF1-208ENST00000532560 BCDIN3DQ7Z5W3 292 aaKnown RBP12.77□□□□□ -0.37
CPSF1-208ENST00000532560 OR5AS1Q8N127 324 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 THEM6Q8WUY1 208 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 CYGBQ8WWM9 190 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 HRASLS5Q96KN8 279 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 ZNF275Q9NSD4 429 aaPredicted RBP12.77□□□□□ -0.37
CPSF1-208ENST00000532560 HAO2Q9NYQ3 351 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 H2AFY2Q9P0M6 372 aaPredicted RBP12.77□□□□□ -0.37
CPSF1-208ENST00000532560 LAMP5Q9UJQ1 280 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 BLOC1S6Q9UL45 172 aa12.77□□□□□ -0.37
CPSF1-208ENST00000532560 ZFHX3Q15911 3703 aa12.76□□□□□ -0.37
CPSF1-208ENST00000532560 C5orf63A6NC05 138 aa12.76□□□□□ -0.37
CPSF1-208ENST00000532560 TPD52L2O43399 206 aaKnown RBP12.76□□□□□ -0.37
CPSF1-208ENST00000532560 XRCC2O43543 280 aa12.76□□□□□ -0.37
CPSF1-208ENST00000532560 CD5LO43866 347 aa12.76□□□□□ -0.37
CPSF1-208ENST00000532560 LILRA1O75019 489 aa12.76□□□□□ -0.37
CPSF1-208ENST00000532560 MRPL3P09001 348 aaKnown RBP12.76□□□□□ -0.37
CPSF1-208ENST00000532560 H2BFMP0C1H6 154 aa12.76□□□□□ -0.37
CPSF1-208ENST00000532560 SLC2A1P11166 492 aa12.76□□□□□ -0.37
CPSF1-208ENST00000532560 TNFAIP6P98066 277 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-208ENST00000532560 ZNF92Q03936 586 aa12.76□□□□□ -0.37
CPSF1-208ENST00000532560 C11orf91Q3C1V1 193 aa12.76□□□□□ -0.37
CPSF1-208ENST00000532560 GLYATL3Q5SZD4 288 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms