RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SLC5A6Q9Y289 635 aa17.11■□□□□ 0.33
VPS28-213ENST00000530983 KCNK7Q9Y2U2 307 aa17.11■□□□□ 0.33
VPS28-213ENST00000530983 ZNF208O43345 1280 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 SSX5O60225 188 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 FOSL2P15408 326 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 MC2RQ01718 297 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 COL19A1Q14993 1142 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 KLHL24Q6TFL4 600 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 ACOT7LQ6ZUV0 252 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 BPIFCQ8NFQ6 507 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 OR10H5Q8NGA6 315 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 OR5T2Q8NGG2 359 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 PHB2Q99623 299 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 NUDT22Q9BRQ3 303 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 SERINC1Q9NRX5 453 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 KLHL13Q9P2N7 655 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 B3GAT1Q9P2W7 334 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 PURGQ9UJV8 347 aaKnown RBP17.1■□□□□ 0.33
VPS28-213ENST00000530983 ATXN7L1Q9ULK2 861 aaPredicted RBP17.1■□□□□ 0.33
VPS28-213ENST00000530983 SIGLEC6O43699 453 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 EFNA2O43921 213 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 CBX5P45973 191 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 STARP49675 285 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 SUMO3P55854 103 aaPredicted RBP17.1■□□□□ 0.33
VPS28-213ENST00000530983 STT3BQ8TCJ2 826 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 ZNF471Q9BX82 626 aaPredicted RBP17.1■□□□□ 0.33
VPS28-213ENST00000530983 SELENOIQ9C0D9 397 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 LMAN1LQ9HAT1 526 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 ATPIF1Q9UII2 106 aa17.1■□□□□ 0.33
VPS28-213ENST00000530983 A0A1B0GW55 424 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 FAM25EA8MYX2 175 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 EFSO43281 561 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 ERCC1P07992 297 aaPredicted RBP17.09■□□□□ 0.33
VPS28-213ENST00000530983 DUX4L2P0CJ85 424 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 DUX4L3P0CJ86 424 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 DUX4L4P0CJ87 422 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 DUX4L5P0CJ88 424 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 DUX4L6P0CJ89 424 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 DUX4L7P0CJ90 424 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 GPR85P60893 370 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 ELP2Q6IA86 826 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 PTCRAQ6ISU1 281 aaPredicted RBP17.09■□□□□ 0.33
VPS28-213ENST00000530983 FAHD2BQ6P2I3 314 aaPredicted RBP17.09■□□□□ 0.33
VPS28-213ENST00000530983 OR5D14Q8NGL3 314 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 FAHD2AQ96GK7 314 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 NICN1Q9BSH3 213 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 MRPL13Q9BYD1 178 aaKnown RBP17.09■□□□□ 0.33
VPS28-213ENST00000530983 FANCFQ9NPI8 374 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 TAS2R3Q9NYW6 316 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 DUX4Q9UBX2 424 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 B3GALT5Q9Y2C3 310 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 RALGAPA1Q6GYQ0 2036 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 TMEM14DPA8MWL7 114 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 SULT2B1O00204 365 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 CASRP41180 1078 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 CSNK1EP49674 416 aaKnown RBP17.09■□□□□ 0.33
VPS28-213ENST00000530983 AWAT2Q6E213 333 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 OR2W3Q7Z3T1 314 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 ANGPTL5Q86XS5 388 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 DTWD2Q8NBA8 298 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 NFAM1Q8NET5 270 aaPredicted RBP17.09■□□□□ 0.33
VPS28-213ENST00000530983 OR10R2Q8NGX6 335 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 OR51E1Q8TCB6 317 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 CASTOR1Q8WTX7 329 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 PHYHIPLQ96FC7 376 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 ALKBH4Q9NXW9 302 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 FBLN5Q9UBX5 448 aa17.09■□□□□ 0.33
VPS28-213ENST00000530983 A0A1W2PNV4 684 aa17.08■□□□□ 0.33
VPS28-213ENST00000530983 VSTM2BA6NLU5 285 aa17.08■□□□□ 0.33
VPS28-213ENST00000530983 AKR1C4P17516 323 aa17.08■□□□□ 0.33
VPS28-213ENST00000530983 CNR1P21554 472 aa17.08■□□□□ 0.33
VPS28-213ENST00000530983 VAMP1P23763 118 aa17.08■□□□□ 0.33
VPS28-213ENST00000530983 LAP3P28838 519 aa17.08■□□□□ 0.33
VPS28-213ENST00000530983 RPL35P42766 123 aaKnown RBP17.08■□□□□ 0.33
VPS28-213ENST00000530983 OR2I1PQ8NGU4 316 aa17.08■□□□□ 0.33
VPS28-213ENST00000530983 SPACA5Q96QH8 159 aa17.08■□□□□ 0.33
VPS28-213ENST00000530983 LHFPL6Q9Y693 200 aa17.08■□□□□ 0.33
VPS28-213ENST00000530983 CEP192Q8TEP8 1941 aa17.08■□□□□ 0.32
VPS28-213ENST00000530983 ZNF93P35789 620 aaPredicted RBP17.08■□□□□ 0.32
VPS28-213ENST00000530983 GSK3AP49840 483 aa17.08■□□□□ 0.32
VPS28-213ENST00000530983 PRKXP51817 358 aa17.08■□□□□ 0.32
VPS28-213ENST00000530983 ANKRD37Q7Z713 158 aa17.08■□□□□ 0.32
VPS28-213ENST00000530983 ZC3H10Q96K80 434 aaKnown RBP17.08■□□□□ 0.32
VPS28-213ENST00000530983 NUDT16L1Q9BRJ7 211 aaKnown RBP17.08■□□□□ 0.32
VPS28-213ENST00000530983 TGIF2Q9GZN2 237 aa17.08■□□□□ 0.32
VPS28-213ENST00000530983 GAREM1Q9H706 876 aa17.08■□□□□ 0.32
VPS28-213ENST00000530983 MBD2Q9UBB5 411 aa17.08■□□□□ 0.32
VPS28-213ENST00000530983 RPH3AQ9Y2J0 694 aaPredicted RBP17.08■□□□□ 0.32
VPS28-213ENST00000530983 ETV2O00321 342 aaPredicted RBP17.07■□□□□ 0.32
VPS28-213ENST00000530983 SCGNO76038 276 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 DUS4LO95620 317 aaKnown RBP17.07■□□□□ 0.32
VPS28-213ENST00000530983 PMP2P02689 132 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 PPIAP62937 165 aaKnown RBP17.07■□□□□ 0.32
VPS28-213ENST00000530983 SNTB1Q13884 538 aaKnown RBP17.07■□□□□ 0.32
VPS28-213ENST00000530983 KCTD9Q7L273 389 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 CADM4Q8NFZ8 388 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 USB1Q9BQ65 265 aaKnown RBP17.07■□□□□ 0.32
VPS28-213ENST00000530983 SOX7Q9BT81 388 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 A0A0A6YYD4 124 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 DBX1A6NMT0 343 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms