RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TRGV8A0A0C4DH27 118 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 C5orf49A4QMS7 147 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 CTDSP2O14595 271 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 MSTNO14793 375 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 LMX1BO60663 402 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 MAS1P04201 325 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 SERPINA5P05154 406 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 FSTP19883 344 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 CCNOP22674 350 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 APLNRP35414 380 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 BHLHA15Q7RTS1 189 aaPredicted RBP18.27■□□□□ 0.52
VPS28-208ENST00000527797 PARP16Q8N5Y8 322 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 SGK3Q96BR1 496 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 POM121L2Q96KW2 1035 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 LYZL4Q96KX0 146 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 VKORC1Q9BQB6 163 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 ZCCHC4Q9H5U6 513 aa18.27■□□□□ 0.52
VPS28-208ENST00000527797 A0A1W2PR80 420 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 RGS5O15539 181 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 ZNF20P17024 532 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 BMP5P22003 454 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 PSMD7P51665 324 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 MZT2AQ6P582 158 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 ZNF584Q8IVC4 421 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 SERPINA12Q8IW75 414 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 WDR31Q8NA23 367 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 PLPP7Q8NBV4 271 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 OR1J2Q8NGS2 313 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 ACOT12Q8WYK0 555 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 KCTD12Q96CX2 325 aaKnown RBP18.27■□□□□ 0.51
VPS28-208ENST00000527797 ZNF75AQ96N20 296 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 SOX7Q9BT81 388 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 C1QTNF5Q9BXJ0 243 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 OBP2BQ9NPH6 170 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 TAS2R4Q9NYW5 299 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 DAPK2Q9UIK4 370 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 ZNF391Q9UJN7 358 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 V9GY05 133 aa18.27■□□□□ 0.51
VPS28-208ENST00000527797 MTRF1O75570 445 aaKnown RBP18.26■□□□□ 0.51
VPS28-208ENST00000527797 EPXP11678 715 aa18.26■□□□□ 0.51
VPS28-208ENST00000527797 IGFBP3P17936 291 aaPredicted RBP18.26■□□□□ 0.51
VPS28-208ENST00000527797 SLC25A35Q3KQZ1 300 aa18.26■□□□□ 0.51
VPS28-208ENST00000527797 S100ZQ8WXG8 99 aa18.26■□□□□ 0.51
VPS28-208ENST00000527797 RGCCQ9H4X1 137 aa18.26■□□□□ 0.51
VPS28-208ENST00000527797 ANXA2P2A6NMY6 339 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 INHBBP09529 407 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 CCL2P13500 99 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 CBR1P16152 277 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 ADRA2CP18825 462 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 IL32P24001 234 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 GNALP38405 381 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 ASPHD2Q6ICH7 369 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 COLCA1Q6ZS62 124 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 NCCRP1Q6ZVX7 275 aaPredicted RBP18.25■□□□□ 0.51
VPS28-208ENST00000527797 MRGPRGQ86SM5 289 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 SLC30A7Q8NEW0 376 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 OR5D14Q8NGL3 314 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 OR14K1Q8NGZ2 314 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 RND1Q92730 232 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 ADAT3Q96EY9 351 aaPredicted RBP18.25■□□□□ 0.51
VPS28-208ENST00000527797 REEP6Q96HR9 211 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 CEP19Q96LK0 163 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 DMRTA2Q96SC8 542 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 GFI1Q99684 422 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 SLC30A2Q9BRI3 323 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 PLEKHA1Q9HB21 404 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 MEMO1Q9Y316 297 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 CMAHPQ9Y471 501 aa18.25■□□□□ 0.51
VPS28-208ENST00000527797 A8MXE2 369 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 EEF1E1-BLOC1S5C9J1V9 151 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 EEF1E1O43324 174 aaKnown RBP18.24■□□□□ 0.51
VPS28-208ENST00000527797 XRCC2O43543 280 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 DHRS3O75911 302 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 PPP3R1P63098 170 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 GLYATL3Q5SZD4 288 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 Q6ZSR3 168 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 APOBEC3DQ96AK3 386 aaPredicted RBP18.24■□□□□ 0.51
VPS28-208ENST00000527797 MS4A3Q96HJ5 214 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 COMMD3Q9UBI1 195 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 AMDHD2Q9Y303 409 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 V9GYS6 101 aa18.24■□□□□ 0.51
VPS28-208ENST00000527797 LOC390937A0A1W2PQ73 354 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 MEGF11A6BM72 1044 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 OR5H1A6NKK0 313 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 IFITM5A6NNB3 132 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 CLDN25C9JDP6 229 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 TMEM127O75204 238 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 SLC2A2P11168 524 aaPredicted RBP18.23■□□□□ 0.51
VPS28-208ENST00000527797 ZNF14P17017 642 aaPredicted RBP18.23■□□□□ 0.51
VPS28-208ENST00000527797 DDOSTP39656 456 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 CA7P43166 264 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 DYNC1I2Q13409 638 aaKnown RBP18.23■□□□□ 0.51
VPS28-208ENST00000527797 TBC1D28Q2M2D7 210 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 DDI2Q5TDH0 399 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 OR2AE1Q8NHA4 323 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 AKAP1Q92667 903 aaKnown RBP eCLIP18.23■□□□□ 0.51
VPS28-208ENST00000527797 HMG20AQ9NP66 347 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 AKIP1Q9NQ31 210 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 A6NIN4 97 aa18.23■□□□□ 0.51
VPS28-208ENST00000527797 AIPO00170 330 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms