RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 C19orf60Q96EN9 201 aa4.76□□□□□ -1.65
NUP54-215ENST00000514313 TIMM17AQ99595 171 aa4.76□□□□□ -1.65
NUP54-215ENST00000514313 PLA2G2FQ9BZM2 168 aa4.76□□□□□ -1.65
NUP54-215ENST00000514313 ARMC7Q9H6L4 198 aa4.76□□□□□ -1.65
NUP54-215ENST00000514313 SMIM26A0A096LP01 95 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 IGHV5-10-1A0A0J9YXX1 117 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 PLEKHA8P1O95397 391 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 MYCNOSP40205 109 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 UBE2E1P51965 193 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 TAS2R46P59540 309 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 AVPI1Q5T686 147 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 IGFL2Q6UWQ7 119 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 RAB43Q86YS6 212 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 KRTAP11-1Q8IUC1 163 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 ASZ1Q8WWH4 475 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 SRSF12Q8WXF0 261 aaKnown RBP4.75□□□□□ -1.65
NUP54-215ENST00000514313 RCN3Q96D15 328 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 UBE2E2Q96LR5 201 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 REEP1Q9H902 201 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 ZNF223Q9UK11 482 aaPredicted RBP4.75□□□□□ -1.65
NUP54-215ENST00000514313 LRP4O75096 1905 aa4.75□□□□□ -1.65
NUP54-215ENST00000514313 IGHV1-69DA0A0B4J2H0 117 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 DNASE2O00115 360 aaPredicted RBP4.74□□□□□ -1.65
NUP54-215ENST00000514313 PSMD11O00231 422 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 SEMA3DO95025 777 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 IGHV1-8P0DP01 117 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 PSMC3P17980 439 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 CD70P32970 193 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 NOVP48745 357 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 HADHBP55084 474 aaKnown RBP4.74□□□□□ -1.65
NUP54-215ENST00000514313 PSMC5P62195 406 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 RBMY1FQ15415 496 aaKnown RBP4.74□□□□□ -1.65
NUP54-215ENST00000514313 KRT71Q3SY84 523 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 LIN9Q5TKA1 542 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 OR2T5Q6IEZ7 315 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 CD300LGQ6UXG3 332 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 OR2T29Q8NH02 315 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 FAM104AQ969W3 186 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 RNF170Q96K19 258 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 MAP1LC3CQ9BXW4 147 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 CHRNA10Q9GZZ6 450 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 STMN4Q9H169 189 aaPredicted RBP4.74□□□□□ -1.65
NUP54-215ENST00000514313 C12orf10Q9HB07 376 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 TMEM27Q9HBJ8 222 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 LHX9Q9NQ69 397 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 RRAGDQ9NQL2 400 aaPredicted RBP4.74□□□□□ -1.65
NUP54-215ENST00000514313 FBXO8Q9NRD0 319 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 CES1P1Q9UKY3 287 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 OR51B2Q9Y5P1 312 aa4.74□□□□□ -1.65
NUP54-215ENST00000514313 GCGP01275 180 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 DTYMKP23919 212 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 MYL9P24844 172 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 GGT2P36268 569 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 OR2B8PP59922 312 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 TCEAL5Q5H9L2 206 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 TRIML2Q8N7C3 387 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 C15orf40Q8WUR7 153 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 TCEAL3Q969E4 200 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 TMIGD2Q96BF3 282 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 HAUS1Q96CS2 278 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 MSANTD3Q96H12 275 aa4.73□□□□□ -1.65
NUP54-215ENST00000514313 TSSC4Q9Y5U2 329 aaPredicted RBP4.73□□□□□ -1.65
NUP54-215ENST00000514313 IGLV1-50A0A075B6I6 118 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 A0A0B4J2E0 115 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 LOC100506127A0A0U1RQW1 187 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 RFXANKO14593 260 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 POLR1CO15160 346 aaPredicted RBP4.72□□□□□ -1.65
NUP54-215ENST00000514313 CTNSO60931 367 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 LCA5LO95447 670 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 TAS2R39P59534 338 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 SNRNP35Q16560 246 aaKnown RBP4.72□□□□□ -1.65
NUP54-215ENST00000514313 ATP6V1FQ16864 119 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 Q3ZCU0 254 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 TFDP3Q5H9I0 405 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 NDUFAF7Q7L592 441 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 ZNF786Q8N393 782 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 OR8K3Q8NH51 312 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 OR5W2Q8NH69 310 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 PTX4Q96A99 478 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 PDXPQ96GD0 296 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 CAMK2N2Q96S95 79 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 SAMD10Q9BYL1 202 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 ZNF222Q9UK12 451 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 TBX21Q9UL17 535 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 ZNF257Q9Y2Q1 563 aa4.72□□□□□ -1.65
NUP54-215ENST00000514313 DFFAO00273 331 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 THRAP10827 490 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 CASQ1P31415 396 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 RPL23P62829 140 aaKnown RBP4.71□□□□□ -1.66
NUP54-215ENST00000514313 SLC35B1P78383 322 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 DEFB116Q30KQ4 102 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 NDUFAF6Q330K2 333 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 PID1Q7Z2X4 250 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 LINC01551Q86U37 167 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 CENPNQ96H22 339 aaPredicted RBP4.71□□□□□ -1.66
NUP54-215ENST00000514313 HINT2Q9BX68 163 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 ZNF442Q9H7R0 627 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 ANKHQ9HCJ1 492 aa4.71□□□□□ -1.66
NUP54-215ENST00000514313 RBMX2Q9Y388 322 aaKnown RBP4.71□□□□□ -1.66
NUP54-215ENST00000514313 A0A1W2PP18 115 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms