RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 SLC18B1Q6NT16 456 aa12.1□□□□□ -0.47
TRAF4-212ENST00000498540 ZNF826PQ6ZT77 177 aa12.1□□□□□ -0.47
TRAF4-212ENST00000498540 PGAP1Q75T13 922 aa12.1□□□□□ -0.47
TRAF4-212ENST00000498540 SLC7A13Q8TCU3 470 aa12.1□□□□□ -0.47
TRAF4-212ENST00000498540 SPRYD4Q8WW59 207 aaPredicted RBP12.1□□□□□ -0.47
TRAF4-212ENST00000498540 ZNRD1Q9P1U0 126 aa12.1□□□□□ -0.47
TRAF4-212ENST00000498540 VPREB3Q9UKI3 123 aa12.1□□□□□ -0.47
TRAF4-212ENST00000498540 TMEM5Q9Y2B1 443 aa12.1□□□□□ -0.47
TRAF4-212ENST00000498540 A0A1B0GW55 424 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 CD300LBA8K4G0 201 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 PPP1R3DO95685 299 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 ZNF682O95780 498 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 NPPAP01160 153 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 DUX4L2P0CJ85 424 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 DUX4L3P0CJ86 424 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 DUX4L4P0CJ87 422 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 DUX4L5P0CJ88 424 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 DUX4L6P0CJ89 424 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 DUX4L7P0CJ90 424 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 TRAP1Q12931 704 aaKnown RBP12.09□□□□□ -0.47
TRAF4-212ENST00000498540 MALLQ13021 153 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 CDONQ4KMG0 1287 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 KPRPQ5T749 579 aaPredicted RBP12.09□□□□□ -0.47
TRAF4-212ENST00000498540 SAMD5Q5TGI4 173 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 METTL21CQ5VZV1 264 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 PGM2L1Q6PCE3 622 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 DUX4L9Q6RFH8 374 aaPredicted RBP12.09□□□□□ -0.47
TRAF4-212ENST00000498540 MRPL21Q7Z2W9 205 aaKnown RBP12.09□□□□□ -0.47
TRAF4-212ENST00000498540 TSEN54Q7Z6J9 526 aaKnown RBP12.09□□□□□ -0.47
TRAF4-212ENST00000498540 GCSAMQ8N6F7 178 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 SLC26A10Q8NG04 563 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 ST8SIA4Q92187 359 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 RSRC1Q96IZ7 334 aaKnown RBP12.09□□□□□ -0.47
TRAF4-212ENST00000498540 ATP6V1G3Q96LB4 118 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 PITX2Q99697 317 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 ATF6BQ99941 703 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 PNRC2Q9NPJ4 139 aaKnown RBP12.09□□□□□ -0.47
TRAF4-212ENST00000498540 TRIM36Q9NQ86 728 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 C1orf123Q9NWV4 160 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 DUX4Q9UBX2 424 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 RPUSD1Q9UJJ7 312 aaKnown RBP12.09□□□□□ -0.47
TRAF4-212ENST00000498540 FAM96BQ9Y3D0 163 aa12.09□□□□□ -0.47
TRAF4-212ENST00000498540 IGHV3OR15-7A0A075B7D8 119 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 A0A1B0GVI7 797 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 BBIP1A8MTZ0 92 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 PIN1P1O15428 100 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 NDUFA2O43678 99 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 EDF1O60869 148 aaKnown RBP12.08□□□□□ -0.48
TRAF4-212ENST00000498540 TXNDC12O95881 172 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 FBP1P09467 338 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 CRABP1P29762 137 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 MDH1P40925 334 aaKnown RBP12.08□□□□□ -0.48
TRAF4-212ENST00000498540 DLX1P56177 255 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 ELF3P78545 371 aaPredicted RBP12.08□□□□□ -0.48
TRAF4-212ENST00000498540 SNAI3Q3KNW1 292 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 IFI44LQ53G44 452 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 DNM1P34Q6PK57 102 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 DPY19L2P2Q6ZN68 376 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 RRM2BQ7LG56 351 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 OR6V1Q8N148 313 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 OR2AE1Q8NHA4 323 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 HSH2DQ96JZ2 352 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 SLC22A4Q9H015 551 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 CNTD2Q9H8S5 307 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 SRA1Q9HD15 236 aaKnown RBP12.08□□□□□ -0.48
TRAF4-212ENST00000498540 SIRT7Q9NRC8 400 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 INTS9Q9NV88 658 aaKnown RBP12.08□□□□□ -0.48
TRAF4-212ENST00000498540 ONECUT1Q9UBC0 465 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 B9D1Q9UPM9 204 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 KPTNQ9Y664 436 aa12.08□□□□□ -0.48
TRAF4-212ENST00000498540 BTBD17A6NE02 478 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 A6NLC8 198 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 GMDSO60547 372 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 ECDO95905 644 aaPredicted RBP12.07□□□□□ -0.48
TRAF4-212ENST00000498540 OPN1MWP04001 364 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 GRPP07492 148 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 OPN1MW2P0DN77 364 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 OPN1MW3P0DN78 364 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 TGFBR2P37173 567 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 OMPP47874 163 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 RPS6KA3P51812 740 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 ZNF92Q03936 586 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 ECH1Q13011 328 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 KLF10Q13118 480 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 FAM189A2Q15884 450 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 TEX36Q5VZQ5 186 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 PLPP7Q8NBV4 271 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 TMEM120AQ9BXJ8 343 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 ANKRD19PQ9H560 264 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 CMTM6Q9NX76 183 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 KAAG1Q9UBP8 84 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 DNAJB11Q9UBS4 358 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 CYB5R1Q9UHQ9 305 aa12.07□□□□□ -0.48
TRAF4-212ENST00000498540 NOP16Q9Y3C1 178 aaKnown RBP12.07□□□□□ -0.48
TRAF4-212ENST00000498540 LOC100653049A0A140TA62 436 aa12.06□□□□□ -0.48
TRAF4-212ENST00000498540 A0A1W2PRD5 423 aa12.06□□□□□ -0.48
TRAF4-212ENST00000498540 A0A1W2PRF3 423 aa12.06□□□□□ -0.48
TRAF4-212ENST00000498540 A0A1W2PRM7 423 aa12.06□□□□□ -0.48
TRAF4-212ENST00000498540 hCG_1807616A0A1W2PRN6 198 aa12.06□□□□□ -0.48
TRAF4-212ENST00000498540 RNASEK-C17orf49H0YIS7 233 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 164.6 ms