RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 GLYATL3Q5SZD4 288 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 KRT77Q7Z794 578 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 OR2AE1Q8NHA4 323 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 EME1Q96AY2 570 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 TIMD4Q96H15 378 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 CNN2Q99439 309 aaKnown RBP13.53□□□□□ -0.24
LIME1-209ENST00000494776 IMPAD1Q9NX62 359 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 USE1Q9NZ43 259 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 IL19Q9UHD0 177 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 TMEM14AQ9Y6G1 99 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 CR1P17927 2039 aa13.52□□□□□ -0.24
LIME1-209ENST00000494776 XRCC2O43543 280 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 LILRA1O75019 489 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 TACSTD2P09758 323 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 IGHV4-31P0DP07 118 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 ALOX5APP20292 161 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 ZNF121P58317 390 aaPredicted RBP13.52□□□□□ -0.25
LIME1-209ENST00000494776 EFNB1P98172 346 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 MVKQ03426 396 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 ZNF92Q03936 586 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 KRTAP1-1Q07627 177 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 AADACL4Q5VUY2 407 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 KCTD18Q6PI47 426 aaPredicted RBP13.52□□□□□ -0.25
LIME1-209ENST00000494776 LRRN1Q6UXK5 716 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 ZBTB49Q6ZSB9 765 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 FAM57BQ71RH2 274 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 PEG10Q86TG7 708 aaKnown RBP13.52□□□□□ -0.25
LIME1-209ENST00000494776 OR10AD1Q8NGE0 317 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 FAM81AQ8TBF8 368 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 ITLN1Q8WWA0 313 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 RAB1CQ92928 201 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 PGAM5Q96HS1 289 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 OR2V2Q96R30 315 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 SLC30A2Q9BRI3 323 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 OR10A2Q9H208 303 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 OPA3Q9H6K4 179 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 KLHDC2Q9Y2U9 406 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 CACNG2Q9Y698 323 aa13.52□□□□□ -0.25
LIME1-209ENST00000494776 NIPBLQ6KC79 2804 aaeCLIP13.52□□□□□ -0.25
LIME1-209ENST00000494776 CD300LBA8K4G0 201 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 INAFM1C9JVW0 142 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 SRP9P49458 86 aaKnown RBP13.51□□□□□ -0.25
LIME1-209ENST00000494776 ZSCAN26Q16670 478 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 GFOD2Q3B7J2 385 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 SPRNQ5BIV9 151 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 AVPI1Q5T686 147 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 OR52H1Q8NGJ2 320 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 OR8J1Q8NGP2 316 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 ASB17Q8WXJ9 295 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 REPIN1Q9BWE0 567 aaKnown RBP13.51□□□□□ -0.25
LIME1-209ENST00000494776 MROQ9BYG7 248 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 NIPAL2Q9H841 368 aa13.51□□□□□ -0.25
LIME1-209ENST00000494776 NOP16Q9Y3C1 178 aaKnown RBP13.51□□□□□ -0.25
LIME1-209ENST00000494776 CHD3Q12873 2000 aaKnown RBP13.51□□□□□ -0.25
LIME1-209ENST00000494776 LOC100289279A0A1B0GTE1 492 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 C5orf63A6NC05 138 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 A8MV72 311 aaPredicted RBP13.5□□□□□ -0.25
LIME1-209ENST00000494776 H0YL77 283 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 PSMD9O00233 223 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 HLA-DPB1P04440 258 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 ZNF16P17020 682 aaPredicted RBP13.5□□□□□ -0.25
LIME1-209ENST00000494776 ATP6V1E1P36543 226 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 C6orf52Q5T4I8 152 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 SLC35F2Q8IXU6 374 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 OR51G2Q8NGK0 314 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 HPS1Q92902 700 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 RFKQ969G6 155 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 REEP6Q96HR9 211 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 TTTY10Q9BZA0 68 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 SLC22A4Q9H015 551 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 WARS2Q9UGM6 360 aaKnown RBP13.5□□□□□ -0.25
LIME1-209ENST00000494776 IKZF2Q9UKS7 526 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 PPP1R3CQ9UQK1 317 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 LRP12Q9Y561 859 aa13.5□□□□□ -0.25
LIME1-209ENST00000494776 ISPDA4D126 451 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 ZNF670-ZNF695F2Z2N8 137 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 F5H5P2 479 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 PHYHO14832 338 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 CA6P23280 308 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 ANOS1P23352 680 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 CFL1P23528 166 aaKnown RBP13.49□□□□□ -0.25
LIME1-209ENST00000494776 HTR1FP30939 366 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 IL2RGP31785 369 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 GABPB1Q06547 395 aaPredicted RBP13.49□□□□□ -0.25
LIME1-209ENST00000494776 POU4F2Q12837 409 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 OR8G1Q15617 311 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 FAM166AQ6J272 317 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 OR56B2PQ8NGI1 322 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 CLDND2Q8NHS1 167 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 TRUB1Q8WWH5 349 aaKnown RBP13.49□□□□□ -0.25
LIME1-209ENST00000494776 SGK3Q96BR1 496 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 MSI2Q96DH6 328 aaKnown RBP13.49□□□□□ -0.25
LIME1-209ENST00000494776 MEGF10Q96KG7 1140 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 HRASLS5Q96KN8 279 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 MNTQ99583 582 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 ADGRL4Q9HBW9 690 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 TMEM106BQ9NUM4 274 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 HAO2Q9NYQ3 351 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 WIPI2Q9Y4P8 454 aa13.49□□□□□ -0.25
LIME1-209ENST00000494776 GMPPBQ9Y5P6 360 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms