RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TAS2R19P59542 299 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 HDDC2Q7Z4H3 204 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 GALNTL5Q7Z4T8 443 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 ESX1Q8N693 406 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 EID2Q8N6I1 236 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 NAXEQ8NCW5 288 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 OR52N4Q8NGI2 321 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 POC1BQ8TC44 478 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 SHDQ96IW2 340 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 SPSB2Q99619 263 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 MRI1Q9BV20 369 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 SERINC1Q9NRX5 453 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 WNT16Q9UBV4 365 aa14.68□□□□□ -0.06
CCDC88B-210ENST00000494566 DISC1C4P0D8 188 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 G3V3Y1 287 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 ERCC1P07992 297 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 EPHA8P29322 1005 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 ZNF41P51814 821 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 RABEPKQ7Z6M1 372 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 OR5B2Q96R09 309 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 TSNAXQ99598 290 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 AIFM2Q9BRQ8 373 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 TMPRSS13Q9BYE2 586 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 POTEKPQ9BYX7 375 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 HHLA2Q9UM44 414 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 FAM96BQ9Y3D0 163 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 LIPT2A6NK58 231 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 HTR3BO95264 441 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 PGAM2P15259 253 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 CD96P40200 585 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 PRSS12P56730 875 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 ACY1Q03154 408 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 RNASE10Q5GAN6 216 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 GLT8D1Q68CQ7 371 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 CPEB2Q7Z5Q1 589 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 MFSD8Q8NHS3 518 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 MARCH1Q8TCQ1 289 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 TMED6Q8WW62 240 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 ST8SIA1Q92185 356 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 DDIT4LQ96D03 193 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 CNTD2Q9H8S5 307 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 PRDM6Q9NQX0 595 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 B3GAT1Q9P2W7 334 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 MYOTQ9UBF9 498 aa14.67□□□□□ -0.06
CCDC88B-210ENST00000494566 IGLV3-12A0A075B6K2 115 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 OR6C65A6NJZ3 312 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 ADAP1O75689 374 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 ZNF205O95201 554 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 LDOC1O95751 146 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 PTGDSP41222 190 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 APOBEC1P41238 236 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 AKR1C3P42330 323 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 LYSMD4Q5XG99 296 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 FAM166AQ6J272 317 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 JMJD6Q6NYC1 403 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 Q7L0L9 218 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 ZNF101Q8IZC7 436 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 ZC3H10Q96K80 434 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 ZNF416Q9BWM5 594 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 LDAHQ9H6V9 325 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 TAS2R8Q9NYW2 309 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 SIT1Q9Y3P8 196 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 ITGB2P05107 769 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 NPY4RP50391 375 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 DAP3P51398 398 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 OR10S1Q8NGN2 331 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 ELP5Q8TE02 316 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 SLAMF6Q96DU3 332 aa14.66□□□□□ -0.06
CCDC88B-210ENST00000494566 RNF222A6NCQ9 220 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 ATG12O94817 140 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 FARS2O95363 451 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 IGFBP3P17936 291 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 OR6K3Q8NGY3 331 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 DCUN1D4Q92564 292 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 NKX6-2Q9C056 277 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 PCDHB16Q9NRJ7 776 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 HPF1Q9NWY4 346 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 PATE3B3GLJ2 98 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 SDCBPO00560 298 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 PDGFBP01127 241 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 CFIP05156 583 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 ACTBP60709 375 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 ACTG1P63261 375 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 HLA-BQ31612 363 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 PLPPR5Q32ZL2 321 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 PLEKHN1Q494U1 663 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 DNM1P46Q6ZS02 220 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 MISPQ8IVT2 679 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 OR10H5Q8NGA6 315 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 ADAT3Q96EY9 351 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 GSKIPQ9P0R6 139 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 POLR1DQ9Y2S0 133 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 ASPMQ8IZT6 3477 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 NCOA6Q14686 2063 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 A6NIZ1 184 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 ZNF705EA8MWA4 302 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 PMS2P2O95744 297 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 RAP1BP61224 184 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 RAP1AP62834 184 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 C11orf87Q6NUJ2 197 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms