RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 BHLHA15Q7RTS1 189 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 APTXQ7Z2E3 356 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 SYVN1Q86TM6 617 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 BIVMQ86UB2 503 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RANBP3LQ86VV4 465 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TGIF2LYQ8IUE0 185 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CNTN4Q8IWV2 1026 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TUSC5Q8IXB3 177 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 C11orf53Q8IXP5 236 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ZC3H3Q8IXZ2 948 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FAM71AQ8IYT1 594 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TCTE3Q8IZS6 198 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RDH10Q8IZV5 341 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 GCNT2Q8N0V5 402 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 STPG2Q8N412 459 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 STX19Q8N4C7 294 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ATPAF2Q8N5M1 289 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM99Q8N816 258 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 YIPF7Q8N8F6 280 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RTL3Q8N8U3 475 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CSNK1G2-AS1Q8NCQ2 148 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CCDC54Q8NEL0 328 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 BPIFB6Q8NFQ5 453 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 OR10H4Q8NGA5 316 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 OR8J3Q8NGG0 315 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 OR4D6Q8NGJ1 314 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 OR4A15Q8NGL6 344 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 OR1B1Q8NGR6 318 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 OR13F1Q8NGS4 319 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 WDR36Q8NI36 951 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 GLYATL2Q8WU03 294 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RAB2BQ8WUD1 216 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 DCAKDQ8WVC6 231 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TCTEX1D2Q8WW35 142 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 SMPDL3AQ92484 453 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 AP3S1Q92572 193 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 HAS2Q92819 552 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CORO2AQ92828 525 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FGF13Q92913 245 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TADA1Q96BN2 335 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CCDC124Q96CT7 223 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 BPIFA2Q96DR5 249 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 EEF2KMTQ96G04 330 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PIWIL1Q96J94 861 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FAM210BQ96KR6 192 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 C1orf147Q96MC9 270 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 GPR137Q96N19 417 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PANX1Q96RD7 426 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 INTS14Q96SY0 518 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 RNF2Q99496 336 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FMO2Q99518 471 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 EBNA1BP2Q99848 306 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CITED2Q99967 270 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 HSD17B14Q9BPX1 270 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 KLHDC3Q9BQ90 382 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FEM1AQ9BSK4 669 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM208Q9BTX3 173 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 UGT2B28Q9BY64 529 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 REG4Q9BYZ8 158 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ELOVL4Q9GZR5 314 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 HDHD2Q9H0R4 259 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ING2Q9H160 280 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 MIXL1Q9H2W2 232 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 LRRN3Q9H3W5 708 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 C5orf66Q9H5L9 145 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF385DQ9H6B1 395 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 METTL8Q9H825 291 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF430Q9H8G1 570 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 COPS7BQ9H9Q2 264 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 GPN2Q9H9Y4 310 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 C6orf50Q9HD87 102 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM138Q9NPI0 162 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 LHX9Q9NQ69 397 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 DYRK4Q9NR20 520 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FBXO6Q9NRD1 293 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PNO1Q9NRX1 252 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CENPMQ9NSP4 180 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 AHSPQ9NZD4 102 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 THYN1Q9P016 225 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 MED11Q9P086 117 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 GSKIPQ9P0R6 139 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ARMCX1Q9P291 453 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CHRNA9Q9UGM1 479 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 APOBEC3BQ9UH17 382 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 UBQLN2Q9UHD9 624 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PCYOX1Q9UHG3 505 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 OPN4Q9UHM6 478 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF107Q9UII5 783 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF223Q9UK11 482 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FBXO5Q9UKT4 447 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 FBXL3Q9UKT7 428 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 PSMD13Q9UNM6 376 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 VSIG4Q9Y279 399 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 MRPS18BQ9Y676 258 aaKnown RBP1.69□□□□□ -2.14
HMGB1-208ENST00000490788 U3KQ87 197 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 U3KQV3 271 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 BIRC6Q9NR09 4857 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 COL1A2P08123 1366 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 ATMQ13315 3056 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 CELSR2Q9HCU4 2923 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms