RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 TSSK2Q96PF2 358 aa11.48□□□□□ -0.57
VARS-227ENST00000489979 NDEL1Q9GZM8 345 aa11.48□□□□□ -0.57
VARS-227ENST00000489979 RPUSD1Q9UJJ7 312 aaKnown RBP11.48□□□□□ -0.57
VARS-227ENST00000489979 CAB39Q9Y376 341 aaPredicted RBP11.48□□□□□ -0.57
VARS-227ENST00000489979 KPTNQ9Y664 436 aa11.48□□□□□ -0.57
VARS-227ENST00000489979 A0A1B0GVI7 797 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 ANKRD61A6NGH8 418 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 DCTN6O00399 190 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 GPR37O15354 613 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 PTBP3O95758 552 aaKnown RBP11.47□□□□□ -0.57
VARS-227ENST00000489979 IFNW1P05000 195 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 GABRA5P31644 462 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 CDKN2AP42771 156 aaKnown RBP11.47□□□□□ -0.57
VARS-227ENST00000489979 C11orf91Q3C1V1 193 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 PGM2L1Q6PCE3 622 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 CFAP77Q6ZQR2 320 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 ZNF826PQ6ZT77 177 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 MRPL21Q7Z2W9 205 aaKnown RBP11.47□□□□□ -0.57
VARS-227ENST00000489979 ADCK1Q86TW2 530 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 FAM90A1Q86YD7 464 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 C11orf44Q8N8P7 122 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 NPRL2Q8WTW4 380 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 STON2Q8WXE9 905 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 LZICQ8WZA0 190 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 PITX2Q99697 317 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 ADAT1Q9BUB4 502 aaKnown RBP11.47□□□□□ -0.57
VARS-227ENST00000489979 SLC22A4Q9H015 551 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 PPA2Q9H2U2 334 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 NRIP3Q9NQ35 241 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 SIRT7Q9NRC8 400 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 C1orf123Q9NWV4 160 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 ONECUT1Q9UBC0 465 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 DNAJB11Q9UBS4 358 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 FBLN5Q9UBX5 448 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 SIGLEC9Q9Y336 463 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 NOP16Q9Y3C1 178 aaKnown RBP11.47□□□□□ -0.57
VARS-227ENST00000489979 IER3IP1Q9Y5U9 82 aa11.47□□□□□ -0.57
VARS-227ENST00000489979 IGHV3OR15-7A0A075B7D8 119 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 A0A1B0GW55 424 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 A0A1W2PRD5 423 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 A0A1W2PRF3 423 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 A0A1W2PRM7 423 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 CD300LBA8K4G0 201 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 FAM220BPB1ANY3 271 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 PTP4A3O75365 173 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 NDUFB2O95178 105 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 GRPP07492 148 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 DUX4L2P0CJ85 424 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 DUX4L3P0CJ86 424 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 DUX4L4P0CJ87 422 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 DUX4L5P0CJ88 424 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 DUX4L6P0CJ89 424 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 DUX4L7P0CJ90 424 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 MDH1P40925 334 aaKnown RBP11.46□□□□□ -0.57
VARS-227ENST00000489979 LOXL3P58215 753 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 DBPQ10586 325 aaPredicted RBP11.46□□□□□ -0.57
VARS-227ENST00000489979 TRAP1Q12931 704 aaKnown RBP11.46□□□□□ -0.57
VARS-227ENST00000489979 DUX4L9Q6RFH8 374 aaPredicted RBP11.46□□□□□ -0.57
VARS-227ENST00000489979 RRM2BQ7LG56 351 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 LINC00346Q8IVM7 164 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 GCSAMQ8N6F7 178 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 PLPP7Q8NBV4 271 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 DYDC1Q8WWB3 177 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 FAM46AQ96IP4 442 aaKnown RBP11.46□□□□□ -0.57
VARS-227ENST00000489979 GPX7Q96SL4 187 aaPredicted RBP11.46□□□□□ -0.57
VARS-227ENST00000489979 KAAG1Q9UBP8 84 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 DUX4Q9UBX2 424 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 FOXJ3Q9UPW0 622 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 SIGLEC7Q9Y286 467 aa11.46□□□□□ -0.57
VARS-227ENST00000489979 DNAH9Q9NYC9 4486 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 IGLV1-36A0A0B4J1U3 117 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 hCG_1807616A0A1W2PRN6 198 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 A6NLC8 198 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 GMDSO60547 372 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 PPP1R3DO95685 299 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 EEF1B2P24534 225 aaKnown RBP11.45□□□□□ -0.58
VARS-227ENST00000489979 CRABP1P29762 137 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 DLX1P56177 255 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 ELF3P78545 371 aaPredicted RBP11.45□□□□□ -0.58
VARS-227ENST00000489979 ECH1Q13011 328 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 SLC18B1Q6NT16 456 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 DNM1P34Q6PK57 102 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 METAP1DQ6UB28 335 aaPredicted RBP11.45□□□□□ -0.58
VARS-227ENST00000489979 C1orf122Q6ZSJ8 110 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 LY6G5BQ8NDX9 201 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 OR2T12Q8NG77 320 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 OR5R1Q8NH85 324 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 PPP1R14AQ96A00 147 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 ATF6BQ99941 703 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 SRA1Q9HD15 236 aaKnown RBP11.45□□□□□ -0.58
VARS-227ENST00000489979 PNRC2Q9NPJ4 139 aaKnown RBP11.45□□□□□ -0.58
VARS-227ENST00000489979 B9D1Q9UPM9 204 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 AURKCQ9UQB9 309 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 TMEM5Q9Y2B1 443 aa11.45□□□□□ -0.58
VARS-227ENST00000489979 GGT3PA6NGU5 568 aa11.44□□□□□ -0.58
VARS-227ENST00000489979 RNASEK-C17orf49H0YIS7 233 aa11.44□□□□□ -0.58
VARS-227ENST00000489979 MRASO14807 208 aa11.44□□□□□ -0.58
VARS-227ENST00000489979 NPFFO15130 113 aa11.44□□□□□ -0.58
VARS-227ENST00000489979 TXNDC12O95881 172 aa11.44□□□□□ -0.58
VARS-227ENST00000489979 PAHP00439 452 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms