RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 GLI4P10075 376 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 CALCBP10092 127 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 CD37P11049 281 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 SLC2A1P11166 492 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 ZNF32P17041 273 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 AZGP1P25311 298 aaKnown RBP12.39□□□□□ -0.43
CUX1-209ENST00000487284 PER3P56645 1201 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 ARF1P84077 181 aaKnown RBP12.39□□□□□ -0.43
CUX1-209ENST00000487284 GALK2Q01415 458 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 FOXF2Q12947 444 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 MRPL49Q13405 166 aaKnown RBP12.39□□□□□ -0.43
CUX1-209ENST00000487284 KRTAP27-1Q3LI81 207 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 HES5Q5TA89 166 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 DCDC5Q6ZRR9 648 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 FAM57BQ71RH2 274 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 FAM214BQ7L5A3 538 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 SKA3Q8IX90 412 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 CENPSQ8N2Z9 138 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 MINDY2Q8NBR6 621 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 NAXEQ8NCW5 288 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 DNAAF1Q8NEP3 725 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 OR51E1Q8TCB6 317 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 SPTSSAQ969W0 71 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 C12orf49Q9H741 205 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 SLC17A5Q9NRA2 495 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 TAS2R4Q9NYW5 299 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 EXTL2Q9UBQ6 330 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 TIMM10BQ9Y5J6 103 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 TRGV8A0A0C4DH27 118 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 LMX1BO60663 402 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 FARS2O95363 451 aaKnown RBP12.39□□□□□ -0.43
CUX1-209ENST00000487284 MMP7P09237 267 aaPredicted RBP12.39□□□□□ -0.43
CUX1-209ENST00000487284 IL7P13232 177 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 ANOS1P23352 680 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 TIMP3P35625 211 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 SCAND1P57086 179 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 OXA1LQ15070 435 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 P2RY14Q15391 338 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 NCCRP1Q6ZVX7 275 aaPredicted RBP12.39□□□□□ -0.43
CUX1-209ENST00000487284 SLC16A14Q7RTX9 510 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 ZNF100Q8IYN0 542 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 CNEP1R1Q8N9A8 125 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 OR4M1Q8NGD0 313 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 OR1F12Q8NHA8 337 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 ZNF671Q8TAW3 534 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 OR2H1Q9GZK4 316 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 LIN7BQ9HAP6 207 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 C14orf119Q9NWQ9 140 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 MALT1Q9UDY8 824 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 OSGIN2Q9Y236 505 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 ETV7Q9Y603 341 aa12.39□□□□□ -0.43
CUX1-209ENST00000487284 PCNX1Q96RV3 2341 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 A0A0U1RQV5 110 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 MEGF11A6BM72 1044 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 M0R135 149 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 IL2RAP01589 272 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 CEACAM8P31997 349 aaPredicted RBP12.38□□□□□ -0.43
CUX1-209ENST00000487284 TALDO1P37837 337 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 CA7P43166 264 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 KIR2DL2P43627 348 aaPredicted RBP12.38□□□□□ -0.43
CUX1-209ENST00000487284 OR3A2P47893 321 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 PSG4Q00888 419 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 TLE1Q04724 770 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 IL18Q14116 193 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 BAK1Q16611 211 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 UBE2NLQ5JXB2 153 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 FAM166AQ6J272 317 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 ZNF774Q6NX45 483 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 VWA1Q6PCB0 445 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 DRAM2Q6UX65 266 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 Q6ZSR3 168 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 LUZP2Q86TE4 346 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 OR8H2Q8N162 312 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 PLPP7Q8NBV4 271 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 OR1J2Q8NGS2 313 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 FGFBP3Q8TAT2 258 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 ZNF799Q96GE5 643 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 PGAM5Q96HS1 289 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 WNT5BQ9H1J7 359 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 GPR84Q9NQS5 396 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 ZNF224Q9NZL3 707 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 UPB1Q9UBR1 384 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 ATPIF1Q9UII2 106 aa12.38□□□□□ -0.43
CUX1-209ENST00000487284 FAM208BQ5VWN6 2430 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 MYO7BQ6PIF6 2116 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 E9PLN8 166 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 F5H5K5 113 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 SLC17A2O00624 439 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 TNFSF13O75888 250 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 DBHP09172 617 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 CSF3P09919 207 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 TMIGD3P0DMS9 266 aaPredicted RBP12.37□□□□□ -0.43
CUX1-209ENST00000487284 FOXG1P55316 489 aaPredicted RBP12.37□□□□□ -0.43
CUX1-209ENST00000487284 PMPCAQ10713 525 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 TRIM16LQ309B1 348 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 PYDC2Q56P42 97 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 ZNF529Q6P280 563 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 DOK3Q7L591 496 aa12.37□□□□□ -0.43
CUX1-209ENST00000487284 ABHD12BQ7Z5M8 362 aaPredicted RBP12.37□□□□□ -0.43
CUX1-209ENST00000487284 NAA40Q86UY6 237 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms