RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 HIST2H3AQ71DI3 136 aa14.71□□□□□ -0.05
VIM-205ENST00000485947 DPPA2Q7Z7J5 298 aa14.71□□□□□ -0.05
VIM-205ENST00000485947 CIARTQ8N365 385 aaPredicted RBP14.71□□□□□ -0.05
VIM-205ENST00000485947 YIPF7Q8N8F6 280 aa14.71□□□□□ -0.05
VIM-205ENST00000485947 SLAMF6Q96DU3 332 aa14.71□□□□□ -0.05
VIM-205ENST00000485947 PELI1Q96FA3 418 aa14.71□□□□□ -0.05
VIM-205ENST00000485947 AMELYQ99218 206 aa14.71□□□□□ -0.05
VIM-205ENST00000485947 RBM38Q9H0Z9 239 aaKnown RBP14.71□□□□□ -0.05
VIM-205ENST00000485947 NIPAL2Q9H841 368 aa14.71□□□□□ -0.05
VIM-205ENST00000485947 ASH2LQ9UBL3 628 aa14.71□□□□□ -0.05
VIM-205ENST00000485947 FBXL3Q9UKT7 428 aa14.71□□□□□ -0.05
VIM-205ENST00000485947 VPS13CQ709C8 3753 aa14.71□□□□□ -0.05
VIM-205ENST00000485947 IGHV1-18A0A0C4DH31 117 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 LALBAP00709 142 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 CD1AP06126 327 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 TGFBR2P37173 567 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 LIPAP38571 399 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 NAAAQ02083 359 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 DOC2BQ14184 412 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 SLC16A14Q7RTX9 510 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 ANKRD13BQ86YJ7 626 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 NUP37Q8NFH4 326 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 ZNF420Q8TAQ5 688 aaPredicted RBP14.7□□□□□ -0.06
VIM-205ENST00000485947 MAP6Q96JE9 813 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 SMR3AQ99954 134 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 BCL7BQ9BQE9 202 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 CACNG6Q9BXT2 260 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 ACOXLQ9NUZ1 547 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 NDUFB11Q9NX14 153 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 SLCO1C1Q9NYB5 712 aa14.7□□□□□ -0.06
VIM-205ENST00000485947 ATP6V1G2-DDX39BF2Z307 99 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 ZNF701M0R085 212 aaPredicted RBP14.69□□□□□ -0.06
VIM-205ENST00000485947 OGG1O15527 345 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 NOL3O60936 208 aaKnown RBP14.69□□□□□ -0.06
VIM-205ENST00000485947 CSF3P09919 207 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 H2BFMP0C1H6 154 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 CD36P16671 472 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 OPRL1P41146 370 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 TMBIM6P55061 237 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 GRB2P62993 217 aaKnown RBP14.69□□□□□ -0.06
VIM-205ENST00000485947 SSX1Q16384 188 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 TIMM50Q3ZCQ8 353 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 LIPNQ5VXI9 398 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 FDX2Q6P4F2 183 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 RPL22L1Q6P5R6 122 aaKnown RBP14.69□□□□□ -0.06
VIM-205ENST00000485947 CORO6Q6QEF8 472 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 LRRN1Q6UXK5 716 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 CFAP77Q6ZQR2 320 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.69□□□□□ -0.06
VIM-205ENST00000485947 CLVS1Q8IUQ0 354 aaPredicted RBP14.69□□□□□ -0.06
VIM-205ENST00000485947 PHC2Q8IXK0 858 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 LRRC18Q8N456 261 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 FUNDC2Q9BWH2 189 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 REG4Q9BYZ8 158 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 ELOVL3Q9HB03 270 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 DDX28Q9NUL7 540 aaKnown RBP14.69□□□□□ -0.06
VIM-205ENST00000485947 LRP12Q9Y561 859 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 CEPT1Q9Y6K0 416 aa14.69□□□□□ -0.06
VIM-205ENST00000485947 FN1P02751 2386 aaKnown RBP14.68□□□□□ -0.06
VIM-205ENST00000485947 A0A096LPE4 126 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 A0A1W2PPZ6 126 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 B9A039 149 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 H3BSA7 217 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 PSMD9O00233 223 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 SMAD7O15105 426 aaKnown RBP14.68□□□□□ -0.06
VIM-205ENST00000485947 MAGEB4O15481 346 aaPredicted RBP14.68□□□□□ -0.06
VIM-205ENST00000485947 PLPP2O43688 288 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 CECR9P0C854 216 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 SERPINF1P36955 418 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 CDK5R1Q15078 307 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 EFNB3Q15768 340 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 SWI5Q1ZZU3 235 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 SLC36A2Q495M3 483 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 GPR107Q5VW38 600 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 LIPKQ5VXJ0 399 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 SKA3Q8IX90 412 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 OR10S1Q8NGN2 331 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 RPS4Y2Q8TD47 263 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 RAB2BQ8WUD1 216 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 HTRA1Q92743 480 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 DGCR14Q96DF8 476 aaKnown RBP14.68□□□□□ -0.06
VIM-205ENST00000485947 FBXO17Q96EF6 278 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 SH3GL3Q99963 347 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 HDHD2Q9H0R4 259 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 ZNF442Q9H7R0 627 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 PNRC2Q9NPJ4 139 aaKnown RBP14.68□□□□□ -0.06
VIM-205ENST00000485947 CA10Q9NS85 328 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 CENPMQ9NSP4 180 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 ATPIF1Q9UII2 106 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 ENPP5Q9UJA9 477 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 TIMM10BQ9Y5J6 103 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 HIVEP2P31629 2446 aa14.68□□□□□ -0.06
VIM-205ENST00000485947 HEATR1Q9H583 2144 aaKnown RBP14.68□□□□□ -0.06
VIM-205ENST00000485947 COL6A5A8TX70 2615 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 CCDC160A6NGH7 325 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 E9PI62 339 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 RER1O15258 196 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 SGCEO43556 437 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 GABARAPO95166 117 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 CELP19835 753 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms