RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 TOR3AQ9H497 397 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 RIBC2Q9H4K1 309 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 DCAF16Q9NXF7 216 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 ENOPH1Q9UHY7 261 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 YLPM1P49750 1951 aaKnown RBP13.2□□□□□ -0.3
HMGA1-206ENST00000478214 SVEP1Q4LDE5 3571 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 MLNRO43193 412 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 MRPL3P09001 348 aaKnown RBP13.19□□□□□ -0.3
HMGA1-206ENST00000478214 H2BFMP0C1H6 154 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 AADACL4Q5VUY2 407 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 SLC16A9Q7RTY1 509 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 C10orf67Q8IYJ2 551 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 TMEM163Q8TC26 289 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 SPRYD4Q8WW59 207 aaPredicted RBP13.19□□□□□ -0.3
HMGA1-206ENST00000478214 OR2V2Q96R30 315 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 IL4I1Q96RQ9 567 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 REPIN1Q9BWE0 567 aaKnown RBP13.19□□□□□ -0.3
HMGA1-206ENST00000478214 GABARAPL3Q9BY60 117 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 DNAJC27Q9NZQ0 273 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 IL19Q9UHD0 177 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 WIPI2Q9Y4P8 454 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 ABCA2Q9BZC7 2435 aa13.19□□□□□ -0.3
HMGA1-206ENST00000478214 CD300LBA8K4G0 201 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 EI24O14681 340 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 CRLF1O75462 422 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 TGFAP01135 160 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 HLA-DPB1P04440 258 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 ANXA2P07355 339 aaKnown RBP13.18□□□□□ -0.3
HMGA1-206ENST00000478214 TNFRSF1AP19438 455 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 ALOX5APP20292 161 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 ZNF121P58317 390 aaPredicted RBP13.18□□□□□ -0.3
HMGA1-206ENST00000478214 LMO4P61968 165 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 LCN1P1Q5VSP4 162 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 RHOUQ7L0Q8 258 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 MEPCEQ7L2J0 689 aaKnown RBP13.18□□□□□ -0.3
HMGA1-206ENST00000478214 MEGF10Q96KG7 1140 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 YIPF3Q9GZM5 350 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 S100A14Q9HCY8 104 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 TMEM100Q9NV29 134 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 LAMP5Q9UJQ1 280 aa13.18□□□□□ -0.3
HMGA1-206ENST00000478214 IGHV3-64DA0A0J9YX35 117 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 A0A1B0GWJ7 208 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 GGT3PA6NGU5 568 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 F5H5P2 479 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 TBX1O43435 398 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 LMX1BO60663 402 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 APOC1P02654 83 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 ALPLP05186 524 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 CDH15P55291 814 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 SLC3A1Q07837 685 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 FAM166AQ6J272 317 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 LRRN1Q6UXK5 716 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 FAM57BQ71RH2 274 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 PRSS45Q7RTY3 260 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.17□□□□□ -0.3
HMGA1-206ENST00000478214 LINC01356Q8N9X3 169 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 RAB1CQ92928 201 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 TIMD4Q96H15 378 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 C1orf159Q96HA4 380 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 BRD7Q9NPI1 651 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 TMEM106BQ9NUM4 274 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 USE1Q9NZ43 259 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 H2AFY2Q9P0M6 372 aaPredicted RBP13.17□□□□□ -0.3
HMGA1-206ENST00000478214 ZNF319Q9P2F9 582 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 PPP1R3CQ9UQK1 317 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 MALRD1Q5VYJ5 2156 aa13.17□□□□□ -0.3
HMGA1-206ENST00000478214 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.16□□□□□ -0.39e-8■■■□□ 18
HMGA1-206ENST00000478214 FAM157AC9JC47 383 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 XRCC2O43543 280 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 CA6P23280 308 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 NXNL2Q5VZ03 156 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 CBR4Q8N4T8 237 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 OR56B2PQ8NGI1 322 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 SPSB4Q96A44 273 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 SGK3Q96BR1 496 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 PGAM5Q96HS1 289 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 CNN2Q99439 309 aaKnown RBP13.16□□□□□ -0.3
HMGA1-206ENST00000478214 SP140LQ9H930 580 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 GCM1Q9NP62 436 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 KCNS2Q9ULS6 477 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 COPS3Q9UNS2 423 aa13.16□□□□□ -0.3
HMGA1-206ENST00000478214 ISPDA4D126 451 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 SLC22A31A6NKX4 558 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 PRR32B1ATL7 298 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 PSMD9O00233 223 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 SRP9P49458 86 aaKnown RBP13.15□□□□□ -0.3
HMGA1-206ENST00000478214 MMP16P51512 607 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 ALDH3A2P51648 485 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 MAB21L1Q13394 359 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 TIGD6Q17RP2 521 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 GFOD2Q3B7J2 385 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 ZIK1Q3SY52 487 aaPredicted RBP13.15□□□□□ -0.3
HMGA1-206ENST00000478214 ZNF771Q7L3S4 317 aaPredicted RBP13.15□□□□□ -0.3
HMGA1-206ENST00000478214 KRT77Q7Z794 578 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 PEG10Q86TG7 708 aaKnown RBP13.15□□□□□ -0.3
HMGA1-206ENST00000478214 GID4Q8IVV7 300 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 PQLC1Q8N2U9 271 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 OR52H1Q8NGJ2 320 aa13.15□□□□□ -0.3
HMGA1-206ENST00000478214 ZNF420Q8TAQ5 688 aaPredicted RBP13.15□□□□□ -0.3
HMGA1-206ENST00000478214 REEP6Q96HR9 211 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms