RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 TMEM27Q9HBJ8 222 aa3.56□□□□□ -1.84
VPS50-212ENST00000476413 MCUBQ9NWR8 336 aa3.56□□□□□ -1.84
VPS50-212ENST00000476413 BRCA1P38398 1863 aaKnown RBP3.56□□□□□ -1.84
VPS50-212ENST00000476413 NUP214P35658 2090 aaPredicted RBP3.55□□□□□ -1.84
VPS50-212ENST00000476413 SMIM26A0A096LP01 95 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 IGHV1-69DA0A0B4J2H0 117 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 TMEM223A0PJW6 202 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 RAD51BO15315 384 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 SLC16A7O60669 478 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 MPDU1O75352 247 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 REM1O75628 298 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 PRB2P02812 416 aaPredicted RBP3.55□□□□□ -1.84
VPS50-212ENST00000476413 CATP04040 527 aaKnown RBP3.55□□□□□ -1.84
VPS50-212ENST00000476413 DCNP07585 359 aaKnown RBP3.55□□□□□ -1.84
VPS50-212ENST00000476413 OR8U9P0C7N5 309 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 ZNF32P17041 273 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 TCP1P17987 556 aaKnown RBP3.55□□□□□ -1.84
VPS50-212ENST00000476413 GABRR2P28476 465 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 PFN3P60673 137 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 RPL23P62829 140 aaKnown RBP3.55□□□□□ -1.84
VPS50-212ENST00000476413 SNRNP35Q16560 246 aaKnown RBP3.55□□□□□ -1.84
VPS50-212ENST00000476413 C5orf64Q2M2E5 130 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 NKAIN1Q4KMZ8 207 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 LINC00483Q53H64 154 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 SMUG1Q53HV7 270 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 SAXO2Q658L1 398 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 ULK3Q6PHR2 472 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 ASCL4Q6XD76 172 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 SLC16A13Q7RTY0 426 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 VTCN1Q7Z7D3 282 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 OR4K5Q8NGD3 323 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 PIH1D2Q8WWB5 315 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 FLYWCH2Q96CP2 140 aaKnown RBP3.55□□□□□ -1.84
VPS50-212ENST00000476413 ZNF488Q96MN9 340 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 MYOZ1Q9NP98 299 aaPredicted RBP3.55□□□□□ -1.84
VPS50-212ENST00000476413 RGS18Q9NS28 235 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 ZNF282Q9UDV7 671 aaPredicted RBP3.55□□□□□ -1.84
VPS50-212ENST00000476413 OPN4Q9UHM6 478 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 DDX19BQ9UMR2 479 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 TMEM14AQ9Y6G1 99 aa3.55□□□□□ -1.84
VPS50-212ENST00000476413 ZNF701M0R085 212 aaPredicted RBP3.54□□□□□ -1.84
VPS50-212ENST00000476413 BPY2O14599 106 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 MED6O75586 246 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 SNAI1O95863 264 aaPredicted RBP3.54□□□□□ -1.84
VPS50-212ENST00000476413 OTCP00480 354 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 APCSP02743 223 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 RAB5AP20339 215 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 PMCHP20382 165 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 RBMY1FQ15415 496 aaKnown RBP3.54□□□□□ -1.84
VPS50-212ENST00000476413 ZNF829Q3KNS6 432 aaPredicted RBP3.54□□□□□ -1.84
VPS50-212ENST00000476413 ZNF684Q5T5D7 378 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 UNC93AQ86WB7 457 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 OR52K1Q8NGK4 314 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 NARS2Q96I59 477 aaKnown RBP3.54□□□□□ -1.84
VPS50-212ENST00000476413 GPR21Q99679 349 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 HSD17B10Q99714 261 aaKnown RBP3.54□□□□□ -1.84
VPS50-212ENST00000476413 RRAGDQ9NQL2 400 aaPredicted RBP3.54□□□□□ -1.84
VPS50-212ENST00000476413 DDX19AQ9NUU7 478 aaKnown RBP3.54□□□□□ -1.84
VPS50-212ENST00000476413 ZMAT5Q9UDW3 170 aaKnown RBP3.54□□□□□ -1.84
VPS50-212ENST00000476413 ZNF257Q9Y2Q1 563 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 PCM1Q15154 2024 aa3.54□□□□□ -1.84
VPS50-212ENST00000476413 IGKV2D-24A0A075B6R9 120 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 A0A1B0GUH1 482 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 KRBOX1C9JBD0 128 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 CDC40O60508 579 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS50-212ENST00000476413 GLAP06280 429 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 KLK1P06870 262 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 CISD3P0C7P0 127 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 POLR2IP36954 125 aaKnown RBP3.53□□□□□ -1.84
VPS50-212ENST00000476413 CDK5Q00535 292 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 TPRG1LQ5T0D9 272 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 RWDD4Q6NW29 188 aaKnown RBP3.53□□□□□ -1.84
VPS50-212ENST00000476413 CALHM1Q8IU99 346 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 WDFY1Q8IWB7 410 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 OR5T3Q8NGG3 340 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 CIRBP-AS1Q8TBR5 109 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 HAUS1Q96CS2 278 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 RBMXL1Q96E39 390 aaKnown RBP3.53□□□□□ -1.84
VPS50-212ENST00000476413 ZNF382Q96SR6 550 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 SLC38A10Q9HBR0 1119 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 DYRK4Q9NR20 520 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 DOCK9Q9BZ29 2069 aa3.53□□□□□ -1.84
VPS50-212ENST00000476413 CABIN1Q9Y6J0 2220 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 IGKV1-27A0A075B6S5 117 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 TRAV6A0A075B6T7 132 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 ARPC4-TTLL3A0A0A6YYG9 625 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 LOC100653049A0A140TA62 436 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 A0A1W2PPV4 95 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 RSPH10B2B2RC85 870 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 H0YJW9 148 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 H3BN98 237 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 HSBP1O75506 76 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 KRT34O76011 436 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 ADRA2AP08913 450 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 RSPH10BP0C881 870 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 UBE2E1P51965 193 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 PSMD4P55036 377 aaKnown RBP3.52□□□□□ -1.85
VPS50-212ENST00000476413 CLDN6P56747 220 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 LINC00315P59091 139 aa3.52□□□□□ -1.85
VPS50-212ENST00000476413 CRADDP78560 199 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms