RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 FOXL2NBQ6ZUU3 175 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 HAPLN4Q86UW8 402 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 SLC30A8Q8IWU4 369 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 FAM71E2Q8N5Q1 922 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 CCNYL1Q8N7R7 359 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 DRAXINQ8NBI3 349 aaPredicted RBP3.72□□□□□ -1.81
USP4-209ENST00000475873 OR5T2Q8NGG2 359 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 OR8H1Q8NGG4 311 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 OR5D13Q8NGL4 314 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 OR4A15Q8NGL6 344 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 ASB10Q8WXI3 467 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 ACOT11Q8WXI4 607 aaPredicted RBP3.72□□□□□ -1.81
USP4-209ENST00000475873 FAM46AQ96IP4 442 aaKnown RBP3.72□□□□□ -1.81
USP4-209ENST00000475873 PBKQ96KB5 322 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 GAFA1Q96PS6 74 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 PITX2Q99697 317 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 C12orf10Q9HB07 376 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 EMC7Q9NPA0 242 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 TUBG2Q9NRH3 451 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 C19orf12Q9NSK7 152 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 ZFP57Q9NU63 452 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 TMEM100Q9NV29 134 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 EMCNQ9ULC0 261 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 TIMM10BQ9Y5J6 103 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 DNAJC15Q9Y5T4 150 aa3.72□□□□□ -1.81
USP4-209ENST00000475873 A0A1W2PQ09 198 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 OR6C6A6NF89 314 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 H0YAE9 185 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 CASQ2O14958 399 aaPredicted RBP3.71□□□□□ -1.82
USP4-209ENST00000475873 EIF3HO15372 352 aaKnown RBP eCLIP3.71□□□□□ -1.82
USP4-209ENST00000475873 NDUFB3O43676 98 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 DOK2O60496 412 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 SCGB1D2O95969 90 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 FAM153BP0C7A2 387 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 PGA5P0DJD9 388 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 COX5BP10606 129 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 ETFAP13804 333 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 ETS2P15036 469 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 ACADSP16219 412 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 ZNF823P16415 610 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 CCL3L1P16619 93 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 PAICSP22234 425 aaKnown RBP3.71□□□□□ -1.82
USP4-209ENST00000475873 CA6P23280 308 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 FASP25445 335 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 MAGEA4P43358 317 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 INSL3P51460 131 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 CSNK2BP67870 215 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 DR1Q01658 176 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 GNA13Q14344 377 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 KIR2DS1Q14954 304 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 RCN1Q15293 331 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 PGS1Q32NB8 556 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 UGT3A2Q3SY77 523 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 ALG10BQ5I7T1 473 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 FAM27D1Q5T7N8 215 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 ATPAF1Q5TC12 328 aaPredicted RBP3.71□□□□□ -1.82
USP4-209ENST00000475873 MZT2BQ6NZ67 158 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 CEMP1Q6PRD7 247 aaPredicted RBP3.71□□□□□ -1.82
USP4-209ENST00000475873 ZNF782Q6ZMW2 699 aaPredicted RBP3.71□□□□□ -1.82
USP4-209ENST00000475873 LINC00322Q6ZN03 302 aaPredicted RBP3.71□□□□□ -1.82
USP4-209ENST00000475873 ZNF788Q6ZQV5 615 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 LINC00336Q6ZUF6 198 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 TSPYL5Q86VY4 417 aaPredicted RBP3.71□□□□□ -1.82
USP4-209ENST00000475873 LRRC34Q8IZ02 419 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 ALDH16A1Q8IZ83 802 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 NKAIN3Q8N8D7 197 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 LSMEM1Q8N8F7 131 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 PCYOX1LQ8NBM8 494 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 OR8U1Q8NH10 309 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 TCP10LQ8TDR4 215 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 ACMSDQ8TDX5 336 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 ZNF583Q96ND8 569 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 CCDC115Q96NT0 180 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 CPPED1Q9BRF8 314 aaPredicted RBP3.71□□□□□ -1.82
USP4-209ENST00000475873 SLC35A5Q9BS91 424 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 SPATA9Q9BWV2 254 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 WDR13Q9H1Z4 485 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 KCNN2Q9H2S1 579 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 ABCB10Q9NRK6 738 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 FAM53CQ9NYF3 392 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 MARCOQ9UEW3 520 aaPredicted RBP3.71□□□□□ -1.82
USP4-209ENST00000475873 TMED5Q9Y3A6 229 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 FIS1Q9Y3D6 152 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 HILPDAQ9Y5L2 63 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 DSCAML1Q8TD84 2053 aa3.71□□□□□ -1.82
USP4-209ENST00000475873 A0A0B4J2E0 115 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 A0A1B0GX12 115 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 MAGEA13PA6NCF6 341 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 CXorf65A6NEN9 183 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 NUPR2A6NF83 97 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 PRSS29PA6NIE9 313 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 LINC01548A6NM66 108 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 H3BSH0 61 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 AP4M1O00189 453 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 RNF13O43567 381 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 PEX11AO75192 247 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 TIPRLO75663 272 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 CDK2AP2O75956 126 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 LYPD3O95274 346 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 CPSF4O95639 269 aaKnown RBP3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms