RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 CLEC12AQ5QGZ9 265 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 RPL13AP3Q6NVV1 102 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 PGBD2Q6P3X8 592 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 DEFB107AQ8IZN7 70 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 PROKR2Q8NFJ6 384 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 MAP6Q96JE9 813 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 CDRT15Q96T59 188 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 ADAT1Q9BUB4 502 aaKnown RBP16.49■□□□□ 0.23
COL9A3-210ENST00000472880 SLC22A4Q9H015 551 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 CDH10Q9Y6N8 788 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 KIR2DS1A0A191URI9 304 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 CA6P23280 308 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 PYCR1P32322 319 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 MNAT1P51948 309 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 IL13RA1P78552 427 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 SLC9A3R2Q15599 337 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 PRR31Q5SQ13 230 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 WDR25Q64LD2 544 aaPredicted RBP16.48■□□□□ 0.23
COL9A3-210ENST00000472880 LYPD2Q6UXB3 125 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 ZDHHC21Q8IVQ6 265 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 C19orf18Q8NEA5 215 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 OR2T4Q8NH00 348 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 MMADHCQ9H3L0 296 aaPredicted RBP16.48■□□□□ 0.23
COL9A3-210ENST00000472880 EGLN3Q9H6Z9 239 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 UNKLQ9H9P5 680 aaKnown RBP16.48■□□□□ 0.23
COL9A3-210ENST00000472880 FN3KRPQ9HA64 309 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 IL1RAPQ9NPH3 570 aa16.48■□□□□ 0.23
COL9A3-210ENST00000472880 CD300LBA8K4G0 201 aa16.47■□□□□ 0.23
COL9A3-210ENST00000472880 ENSAO43768 121 aaKnown RBP16.47■□□□□ 0.23
COL9A3-210ENST00000472880 RPS27P42677 84 aaKnown RBP16.47■□□□□ 0.23
COL9A3-210ENST00000472880 MPPED2Q15777 294 aa16.47■□□□□ 0.23
COL9A3-210ENST00000472880 KCNJ8Q15842 424 aa16.47■□□□□ 0.23
COL9A3-210ENST00000472880 SNAI3Q3KNW1 292 aa16.47■□□□□ 0.23
COL9A3-210ENST00000472880 CYB561A3Q8NBI2 242 aa16.47■□□□□ 0.23
COL9A3-210ENST00000472880 NSL1Q96IY1 281 aa16.47■□□□□ 0.23
COL9A3-210ENST00000472880 TECTBQ96PL2 329 aa16.47■□□□□ 0.23
COL9A3-210ENST00000472880 RNF7Q9UBF6 113 aa16.47■□□□□ 0.23
COL9A3-210ENST00000472880 SOX21Q9Y651 276 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-210ENST00000472880 MDFIC2A0A1B0GVS7 189 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 GGT3PA6NGU5 568 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 TVP23AA6NH52 213 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 WIPF1O43516 503 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 NPY4RP50391 375 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 FGF12P61328 243 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 SPATS1Q496A3 300 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 GPR157Q5UAW9 335 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 DRAM2Q6UX65 266 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 BRD3OSQ6XYD6 125 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 OR9Q2Q8NGE9 314 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 OR4C15Q8NGM1 316 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 OR10S1Q8NGN2 331 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 OR2AE1Q8NHA4 323 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 COPS4Q9BT78 406 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 ZNF696Q9H7X3 374 aa16.46■□□□□ 0.23
COL9A3-210ENST00000472880 B2RBV5 119 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 BHLHE40O14503 412 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 GMDSO60547 372 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 KRT36O76013 467 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 PSMB10P40306 273 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 ZNF92Q03936 586 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 ZNF841Q6ZN19 808 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 SPATC1Q76KD6 591 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 LINC00471Q8N535 108 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 BOLLQ8N9W6 283 aaKnown RBP16.45■□□□□ 0.22
COL9A3-210ENST00000472880 ZDHHC16Q969W1 377 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 TBC1D23Q9NUY8 699 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 KIF17Q9P2E2 1029 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 ERVK-18Q9QC07 812 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 LYVE1Q9Y5Y7 322 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 COMMD3-BMI1R4GMX3 469 aa16.45■□□□□ 0.22
COL9A3-210ENST00000472880 POM121CA8CG34 1229 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 C22orf46C9J442 243 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 LGALS8O00214 317 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 TNFRSF11BO00300 401 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 SPARCP09486 303 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 CALB2P22676 271 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 OTX1P32242 354 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-210ENST00000472880 TAF13Q15543 124 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 OR8B8Q15620 311 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 GLYATL3Q5SZD4 288 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 CD276Q5ZPR3 534 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 SFRP4Q6FHJ7 346 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-210ENST00000472880 LYPD4Q6UWN0 246 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 DCXRQ7Z4W1 244 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 PLPP7Q8NBV4 271 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 OR51L1Q8NGJ5 315 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 OR9Q1Q8NGQ5 310 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 BTBD10Q9BSF8 475 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 PCGF1Q9BSM1 259 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 OPA3Q9H6K4 179 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 TRIM36Q9NQ86 728 aa16.44■□□□□ 0.22
COL9A3-210ENST00000472880 MRPL15Q9P015 296 aaKnown RBP16.44■□□□□ 0.22
COL9A3-210ENST00000472880 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-210ENST00000472880 A6NLC8 198 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 C3orf80F5H4A9 247 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 HOXA3O43365 443 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-210ENST00000472880 PTBP3O95758 552 aaKnown RBP16.43■□□□□ 0.22
COL9A3-210ENST00000472880 T-ENOLP0DO92 83 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 BPIFB3P59826 476 aa16.43■□□□□ 0.22
COL9A3-210ENST00000472880 HOXA4Q00056 320 aaPredicted RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms