RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NMES1Q9C002 83 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 PPT2Q9UMR5 302 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 FPR2P25090 351 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 TOMM20LQ6UXN7 152 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 LIPIQ6XZB0 460 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 HMGN2P46Q86SG4 172 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 MS4A10Q96PG2 267 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 MED20Q9H944 212 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 CLEC2DQ9UHP7 191 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 TRBV11-1A0A0K0K1C0 115 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 C19orf47Q8N9M1 422 aaKnown RBP12.14□□□□□ -0.47
COL6A3-209ENST00000472056 EXTL1Q92935 676 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 TNFRSF13CQ96RJ3 184 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 NIPSNAP1Q9BPW8 284 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 S1PR5Q9H228 398 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 CHST11Q9NPF2 352 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 A0A0B4J203 849 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 ELAVL1Q15717 326 aaKnown RBP12.14□□□□□ -0.47
COL6A3-209ENST00000472056 MAVSQ7Z434 540 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 UBE3DQ7Z6J8 389 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 LSMEM1Q8N8F7 131 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 AAMDCQ9H7C9 122 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 SPATA6Q9NWH7 488 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-209ENST00000472056 OR7C2O60412 319 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 CD70P32970 193 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 AAED1Q7RTV5 226 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 DCXRQ7Z4W1 244 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 OR4S1Q8NGB4 309 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 MZB1Q8WU39 189 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 TRAF4Q9BUZ4 470 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-209ENST00000472056 CLDN12P56749 244 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 MRPS21P82921 87 aaKnown RBP12.14□□□□□ -0.47
COL6A3-209ENST00000472056 CDK5R1Q15078 307 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 C1orf140Q5VVS0 124 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 MAML2Q8IZL2 1156 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-209ENST00000472056 ZFP62Q8NB50 900 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-209ENST00000472056 TSACCQ96A04 125 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-209ENST00000472056 CA14Q9ULX7 337 aa12.14□□□□□ -0.47
COL6A3-209ENST00000472056 TRIOBPQ9H2D6 2365 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 HEPACAM2A8MVW5 462 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 ELLP55199 621 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 FFAR4Q5NUL3 377 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 MDGA1Q8NFP4 955 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 SCMH1Q96GD3 660 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 GDF2Q9UK05 429 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 HEMK1Q9Y5R4 338 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 CTNSO60931 367 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 NDUFB6O95139 128 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 RPLP1P05386 114 aaKnown RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 SULT1A3P0DMM9 295 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 SULT1A4P0DMN0 295 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 C18orf21Q32NC0 220 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 TRMT12Q53H54 448 aaKnown RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 BRI3BPQ8WY22 251 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 AKR1E2Q96JD6 320 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 CACNG4Q9UBN1 327 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 DDX60LQ5H9U9 1706 aaKnown RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 SERTM2A0A1B0GWG4 89 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 TLCD2A6NGC4 264 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 NR0B2Q15466 257 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 MIDNQ504T8 468 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 ARRDC2Q8TBH0 407 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 DECR2Q9NUI1 292 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 LINC01387J3KSC0 135 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 CD99P14209 185 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 MDH2P40926 338 aaKnown RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM241Q24JQ0 296 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 COPS9Q8WXC6 57 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 ADGRL4Q9HBW9 690 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 NOSIPQ9Y314 301 aaKnown RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 LRRK1Q38SD2 2015 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 LOC107986453A0A1B0GWG9 222 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 MMP11P24347 488 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 MEOX1P50221 254 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 OR4C16Q8NGL9 310 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 LHFPL5Q8TAF8 219 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 DYNLRB1Q9NP97 96 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 LHX3Q9UBR4 397 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 HELTA6NFD8 242 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 CLDN15P56746 228 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 CARD18P57730 90 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 DCDP81605 110 aaKnown RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 SMIM21Q3B7S5 101 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 ZNF789Q5FWF6 425 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 LRRC18Q8N456 261 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 FAM210BQ96KR6 192 aa12.13□□□□□ -0.47
COL6A3-209ENST00000472056 KLF16Q9BXK1 252 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 SLIRPQ9GZT3 109 aaKnown RBP12.13□□□□□ -0.47
COL6A3-209ENST00000472056 AKR1C3P42330 323 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 MED25Q71SY5 747 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 ZNF2Q9BSG1 426 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 TMED7-TICAM2A0A0A6YYA0 188 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 HCRTR1O43613 425 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 CNIH1O95406 144 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM176BQ3YBM2 270 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-209ENST00000472056 ARIH2OSQ8N7S6 290 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 PITPNC1Q9UKF7 332 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 TMED7Q9Y3B3 224 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 PRAMEF25A6NGN4 478 aa12.12□□□□□ -0.47
COL6A3-209ENST00000472056 ANKRD34CP0C6C1 535 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms