RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 ANXA2P07355 339 aaKnown RBP13□□□□□ -0.33
SDC3-203ENST00000471567 SLC2A1P11166 492 aa13□□□□□ -0.33
SDC3-203ENST00000471567 TNFSF4P23510 183 aa13□□□□□ -0.33
SDC3-203ENST00000471567 CRYBB2P43320 205 aa13□□□□□ -0.33
SDC3-203ENST00000471567 NR4A2P43354 598 aa13□□□□□ -0.33
SDC3-203ENST00000471567 TMEM33P57088 247 aa13□□□□□ -0.33
SDC3-203ENST00000471567 ZNF121P58317 390 aaPredicted RBP13□□□□□ -0.33
SDC3-203ENST00000471567 ZNF92Q03936 586 aa13□□□□□ -0.33
SDC3-203ENST00000471567 LOXL1Q08397 574 aaPredicted RBP13□□□□□ -0.33
SDC3-203ENST00000471567 RIN1Q13671 783 aa13□□□□□ -0.33
SDC3-203ENST00000471567 TSTQ16762 297 aaKnown RBP13□□□□□ -0.33
SDC3-203ENST00000471567 LRRC36Q1X8D7 754 aa13□□□□□ -0.33
SDC3-203ENST00000471567 GLYATL3Q5SZD4 288 aa13□□□□□ -0.33
SDC3-203ENST00000471567 LPCAT4Q643R3 524 aa13□□□□□ -0.33
SDC3-203ENST00000471567 LRRN1Q6UXK5 716 aa13□□□□□ -0.33
SDC3-203ENST00000471567 Q6ZR03 302 aa13□□□□□ -0.33
SDC3-203ENST00000471567 USP51Q70EK9 711 aa13□□□□□ -0.33
SDC3-203ENST00000471567 ZNF679Q8IYX0 411 aa13□□□□□ -0.33
SDC3-203ENST00000471567 GALNT4Q8N4A0 578 aa13□□□□□ -0.33
SDC3-203ENST00000471567 ZNF555Q8NEP9 628 aa13□□□□□ -0.33
SDC3-203ENST00000471567 OR51G2Q8NGK0 314 aa13□□□□□ -0.33
SDC3-203ENST00000471567 OR13G1Q8NGZ3 307 aa13□□□□□ -0.33
SDC3-203ENST00000471567 RHOXF1Q8NHV9 184 aa13□□□□□ -0.33
SDC3-203ENST00000471567 OR8B4Q96RC9 309 aa13□□□□□ -0.33
SDC3-203ENST00000471567 SLC30A2Q9BRI3 323 aa13□□□□□ -0.33
SDC3-203ENST00000471567 OR10A2Q9H208 303 aa13□□□□□ -0.33
SDC3-203ENST00000471567 RGCCQ9H4X1 137 aa13□□□□□ -0.33
SDC3-203ENST00000471567 SAP30LQ9HAJ7 183 aa13□□□□□ -0.33
SDC3-203ENST00000471567 COPS3Q9UNS2 423 aa13□□□□□ -0.33
SDC3-203ENST00000471567 LRP12Q9Y561 859 aa13□□□□□ -0.33
SDC3-203ENST00000471567 A0A1B0GWJ7 208 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 DLGAP1O14490 977 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 SMAD7O15105 426 aaKnown RBP12.99□□□□□ -0.33
SDC3-203ENST00000471567 TBX1O43435 398 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 ENTPD6O75354 484 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 OR2T7P0C7T2 308 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 GABRB1P18505 474 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 CFL1P23528 166 aaKnown RBP12.99□□□□□ -0.33
SDC3-203ENST00000471567 COL8A2P25067 703 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 PEX2P28328 305 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 ATP6V1E1P36543 226 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 PSMA6P60900 246 aaKnown RBP12.99□□□□□ -0.33
SDC3-203ENST00000471567 TNFAIP6P98066 277 aaPredicted RBP12.99□□□□□ -0.33
SDC3-203ENST00000471567 EGR3Q06889 387 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 OGFRL1Q5TC84 451 aaPredicted RBP12.99□□□□□ -0.33
SDC3-203ENST00000471567 ZNF322Q6U7Q0 402 aaPredicted RBP12.99□□□□□ -0.33
SDC3-203ENST00000471567 FAM57BQ71RH2 274 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 OR5AS1Q8N127 324 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 OR2Z1Q8NG97 314 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 OR2T27Q8NH04 317 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 YIPF5Q969M3 257 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 ELMOD3Q96FG2 381 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 Q96MT0 163 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 APOL4Q9BPW4 351 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 SLC22A4Q9H015 551 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 TMEM100Q9NV29 134 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 N6AMT1Q9Y5N5 214 aa12.99□□□□□ -0.33
SDC3-203ENST00000471567 VPS13CQ709C8 3753 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 IGHV1-69-2A0A0G2JMI3 117 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 C5orf63A6NC05 138 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 GGT3PA6NGU5 568 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 CD300LBA8K4G0 201 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 LYNX1G3V0Z9 82 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 RP2O75695 350 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 LYNX1P0DP58 116 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 USF1P22415 310 aaPredicted RBP12.98□□□□□ -0.33
SDC3-203ENST00000471567 ANOS1P23352 680 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 DDOSTP39656 456 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 MTNR1AP48039 350 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 RIDAP52758 137 aaKnown RBP12.98□□□□□ -0.33
SDC3-203ENST00000471567 CXCR4P61073 352 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 TIGD6Q17RP2 521 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 TTC23Q5W5X9 447 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 ENTHD1Q8IYW4 607 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 OR2AE1Q8NHA4 323 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 SPRYD4Q8WW59 207 aaPredicted RBP12.98□□□□□ -0.33
SDC3-203ENST00000471567 ITFG2Q969R8 447 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 SGK3Q96BR1 496 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 PGAM5Q96HS1 289 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 BPESC1Q9GZL8 116 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 IL19Q9UHD0 177 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 ZNF391Q9UJN7 358 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 IKZF2Q9UKS7 526 aa12.98□□□□□ -0.33
SDC3-203ENST00000471567 NOP16Q9Y3C1 178 aaKnown RBP12.98□□□□□ -0.33
SDC3-203ENST00000471567 PRR32B1ATL7 298 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 TNFRSF1AP19438 455 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 MMP16P51512 607 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 SLC34A1Q06495 639 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 HFEQ30201 348 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 ZNF829Q3KNS6 432 aaPredicted RBP12.97□□□□□ -0.33
SDC3-203ENST00000471567 BHLHE23Q8NDY6 225 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 REEP6Q96HR9 211 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 VCXQ9H320 206 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 BRD7Q9NPI1 651 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 ZNF275Q9NSD4 429 aaPredicted RBP12.97□□□□□ -0.33
SDC3-203ENST00000471567 FAM206AQ9NX38 181 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 MRPL15Q9P015 296 aaKnown RBP12.97□□□□□ -0.33
SDC3-203ENST00000471567 ZNF319Q9P2F9 582 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 PCDHGB1Q9Y5G3 927 aa12.97□□□□□ -0.33
SDC3-203ENST00000471567 TEP1Q99973 2627 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms