RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	ZNF181	Q2M3W8	571 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	RSPO1	Q2MKA7	263 aa	Predicted RBP	4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	CDON	Q4KMG0	1287 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	DHRS4L2	Q6PKH6	230 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	ZER1	Q7Z7L7	766 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	NAA40	Q86UY6	237 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	IGFN1	Q86VF2	1251 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	PTOV1	Q86YD1	416 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	FAM90A1	Q86YD7	464 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	DYNAP	Q8N1N2	210 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	PNLDC1	Q8NA58	520 aa	Known RBP	4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	SMYD1	Q8NB12	490 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	LY6G5B	Q8NDX9	201 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	GPR32P1	Q8NGA4	272 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	OR4F17	Q8NGA8	305 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	OR9I1	Q8NGQ6	314 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	OR2T6	Q8NHC8	308 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	PFN4	Q8NHR9	129 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	VANGL1	Q8TAA9	524 aa	Predicted RBP	4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	TCP10L	Q8TDR4	215 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	AEN	Q8WTP8	325 aa	Known RBP	4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	ST8SIA4	Q92187	359 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	SLC35B4	Q969S0	331 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	MAEL	Q96JY0	434 aa	Known RBP	4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	CLPTM1L	Q96KA5	538 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	OR4F4	Q96R69	305 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	DDO	Q99489	341 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	SORT1	Q99523	831 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	EPYC	Q99645	322 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	MCHR1	Q99705	422 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	NUF2	Q9BZD4	464 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	PAIP1	Q9H074	479 aa	Known RBP	4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	KCNN2	Q9H2S1	579 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	IKZF5	Q9H5V7	419 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	TMEM27	Q9HBJ8	222 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	A4GALT	Q9NPC4	353 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	SLCO1B3	Q9NPD5	702 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	TRIM36	Q9NQ86	728 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	NANS	Q9NR45	359 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	PNPO	Q9NVS9	261 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	AIG1	Q9NVV5	245 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	CALML5	Q9NZT1	146 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	ERVK-18	Q9QC07	812 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	ONECUT1	Q9UBC0	465 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	PRDM4	Q9UKN5	801 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	MAB21L2	Q9Y586	359 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	TIMM10B	Q9Y5J6	103 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	CAPN7	Q9Y6W3	813 aa		4.26	□□□□□ -1.73
PTPN4-209	ENST00000469511	DSCAML1	Q8TD84	2053 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	SORL1	Q92673	2214 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511		A0A1B0GWJ7	208 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511		A0A1W2PPL8	197 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	BTBD17	A6NE02	478 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	MCIDAS	D6RGH6	385 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	LGALS8	O00214	317 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	SDHD	O14521	159 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	DOK2	O60496	412 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	MT-ATP6	P00846	226 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	BPGM	P07738	259 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	UMPS	P11172	480 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	LBP	P18428	481 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	RHCE	P18577	417 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	GSTM3	P21266	225 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	BGN	P21810	368 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	FPR3	P25089	353 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	SRP9	P49458	86 aa	Known RBP	4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	NPY4R	P50391	375 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	CLNS1A	P54105	237 aa	Known RBP	4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	BLCAP	P62952	87 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	CD47	Q08722	323 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	LRRC74A	Q0VAA2	488 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	OR8B8	Q15620	311 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	DUSP7	Q16829	419 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	PDCD4	Q53EL6	469 aa	Known RBP	4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	CCDC92	Q53HC0	331 aa	Predicted RBP	4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	ENTPD8	Q5MY95	495 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	HHAT	Q5VTY9	493 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	SLC2A7	Q6PXP3	512 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	FBXW12	Q6X9E4	464 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	CCDC121	Q6ZUS5	278 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	FOXL2NB	Q6ZUU3	175 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	TRMT10C	Q7L0Y3	403 aa	Known RBP	4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	TMEM219	Q86XT9	240 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	NKAIN4	Q8IVV8	208 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	SLC30A8	Q8IWU4	369 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	MSRB3	Q8IXL7	192 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	GCSAM	Q8N6F7	178 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	TRIML2	Q8N7C3	387 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	FAM216B	Q8N7L0	139 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	PAPD5	Q8NDF8	572 aa	Known RBP	4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	BEND2	Q8NDZ0	799 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	OR6T1	Q8NGN1	323 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	OR4C13	Q8NGP0	309 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	OR13G1	Q8NGZ3	307 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	BBS10	Q8TAM1	723 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511		Q8TCH9	128 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	APOPT1	Q96IL0	206 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	CCL13	Q99616	98 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	ECSIT	Q9BQ95	431 aa		4.25	□□□□□ -1.73
PTPN4-209	ENST00000469511	CDCA4	Q9BXL8	241 aa		4.25	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms