RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 HSPB11Q9Y547 144 aa4.05□□□□□ -1.76
CCDC88A-210ENST00000468534 POGZQ7Z3K3 1410 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 TGIF2-C20orf24A0A0A6YYL0 155 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 MED19A0JLT2 244 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 PRORSD1PA6NEY8 169 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 CLDN24A6NM45 220 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 HACD1B0YJ81 288 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 J3KR12 359 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 M0QYV0 167 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 GPR31O00270 319 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 GAPDHSO14556 408 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 P2RX6O15547 441 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 ERI3O43414 337 aaKnown RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 OR2J2O76002 312 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 WISP2O76076 250 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 HBE1P02100 147 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 IFNA4P05014 189 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 HTR1AP08908 422 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 LIPCP11150 499 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 MBL2P11226 248 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 IGFBP3P17936 291 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 CXCR1P25024 350 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 ATP5A1P25705 553 aaKnown RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 S100GP29377 79 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 SDC4P31431 198 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 AKR1C3P42330 323 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 PAX9P55771 341 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 ZNF121P58317 390 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 KRTAP10-12P60413 245 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 BTN3A2P78410 334 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 CX3CL1P78423 397 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 RGS1Q08116 209 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 CNTN1Q12860 1018 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 KIAA0141Q14154 515 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 GUSBP1Q15486 140 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 SMIM21Q3B7S5 101 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 C9orf64Q5T6V5 341 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 CPTPQ5TA50 214 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 LPCAT3Q6P1A2 487 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 KCTD18Q6PI47 426 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 FRRS1Q6ZNA5 592 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 FAM19A5Q7Z5A7 132 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 KIR3DL3Q8N743 410 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 ZNF676Q8N7Q3 588 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 ACOT4Q8N9L9 421 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 OR2Z1Q8NG97 314 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 OR5M9Q8NGP3 310 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 Q8WTZ3 238 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 CRYGNQ8WXF5 182 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 ASB17Q8WXJ9 295 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 IMP4Q96G21 291 aaKnown RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 TMEM80Q96HE8 168 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 NXF2Q9GZY0 626 aaKnown RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 MAP1LC3AQ9H492 121 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 SLC25A19Q9HC21 320 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 BIN3Q9NQY0 253 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 HRASLS2Q9NWW9 162 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 VPS29Q9UBQ0 182 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 MUTYHQ9UIF7 546 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 ELF5Q9UKW6 265 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 KCNS2Q9ULS6 477 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 SOGA1O94964 1423 aa4.04□□□□□ -1.76
CCDC88A-210ENST00000468534 TAF1LQ8IZX4 1826 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 CENPVL3A0A0U1RRI6 287 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 A0A1B0GTH9 108 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 hDV102S1A0JD36 115 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 IGSF23A1L1A6 192 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 FAM25AB3EWG3 89 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 FAM25CB3EWG5 89 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 FAM25GB3EWG6 89 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 ANHXE9PGG2 379 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 LOC110117498-PIK3R3F6TDL0 507 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 HSD17B6O14756 317 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 PLIN3O60664 434 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 CLDN11O75508 207 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 MT-CO2P00403 227 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 IFNA1P01562 189 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 APOHP02749 345 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 S100A8P05109 93 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 ACP2P11117 423 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 HTR1DP28221 377 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 PHBP35232 272 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 OR3A2P47893 321 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 SULT1A1P50225 295 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 SULT1A2P50226 295 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 EMDP50402 254 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 DLX6P56179 175 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 TCL1AP56279 114 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 DNAJB13P59910 316 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 GNG3P63215 75 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 GTF2BQ00403 316 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 CD164Q04900 197 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 RAB40BQ12829 278 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 OPCMLQ14982 345 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 MPPED2Q15777 294 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 DUSP7Q16829 419 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 ARHGAP11BQ3KRB8 267 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 TTLL9Q3SXZ7 439 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 C14orf28Q4W4Y0 310 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms