RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 UCK2Q9BZX2 261 aa2□□□□□ -2.09
USP40-209ENST00000452724 SLIRPQ9GZT3 109 aaKnown RBP2□□□□□ -2.09
USP40-209ENST00000452724 GEMIN7Q9H840 131 aaKnown RBP2□□□□□ -2.09
USP40-209ENST00000452724 RHBDL2Q9NX52 303 aa2□□□□□ -2.09
USP40-209ENST00000452724 RABL2BQ9UNT1 228 aa2□□□□□ -2.09
USP40-209ENST00000452724 PCDH11XQ9BZA7 1347 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 A0A075B6Q4 140 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 IGHV3-49A0A0A0MS15 119 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 IGHV3OR16-9A0A0B4J2B5 98 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 BTNL10A8MVZ5 291 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 TNFRSF11BO00300 401 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 GABRPO00591 440 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 POLR1CO15160 346 aaPredicted RBP1.99□□□□□ -2.09
USP40-209ENST00000452724 CHMP2AO43633 222 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 CD160O95971 181 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 CYB5R3P00387 301 aaPredicted RBP1.99□□□□□ -2.09
USP40-209ENST00000452724 PRLHRP49683 370 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 RAB7AP51149 207 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 SIGLEC14Q08ET2 396 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 MERTKQ12866 999 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 PNOCQ13519 176 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 YIF1BQ5BJH7 314 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 FAM222AQ5U5X8 452 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 LUZP2Q86TE4 346 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 GABRG1Q8N1C3 465 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 BBS5Q8N3I7 341 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 LINC00304Q8N9R0 145 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 HAUS1Q96CS2 278 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 BTN2A3PQ96KV6 586 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 TMEM243Q9BU79 118 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 MRM3Q9HC36 420 aaKnown RBP1.99□□□□□ -2.09
USP40-209ENST00000452724 ACP6Q9NPH0 428 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 CLN6Q9NWW5 311 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 PDP1Q9P0J1 537 aaPredicted RBP1.99□□□□□ -2.09
USP40-209ENST00000452724 GCNT4Q9P109 453 aa1.99□□□□□ -2.09
USP40-209ENST00000452724 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.99□□□□□ -2.09
USP40-209ENST00000452724 UBN2Q6ZU65 1347 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 KBTBD11-OT1A0A1B0GTJ5 212 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 M0R3G1 203 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 PLIN3O60664 434 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 IGKV4-1P06312 121 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 ERCC1P07992 297 aaPredicted RBP1.98□□□□□ -2.09
USP40-209ENST00000452724 CLTAP09496 248 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 CTRB1P17538 263 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 USF1P22415 310 aaPredicted RBP1.98□□□□□ -2.09
USP40-209ENST00000452724 HMOX2P30519 316 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 PFN2P35080 140 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 NDUFA8P51970 172 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 BEX3Q00994 111 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 FUT5Q11128 374 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 TWF2Q6IBS0 349 aaKnown RBP1.98□□□□□ -2.09
USP40-209ENST00000452724 EIF3MQ7L2H7 374 aaKnown RBP1.98□□□□□ -2.09
USP40-209ENST00000452724 ZNF101Q8IZC7 436 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 ZNF645Q8N7E2 425 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 APCDD1LQ8NCL9 501 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 OR5T1Q8NG75 326 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 OR4M1Q8NGD0 313 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 CHCHD7Q9BUK0 85 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 SLC7A5P2Q9GIP4 190 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 CLN8Q9UBY8 286 aa1.98□□□□□ -2.09
USP40-209ENST00000452724 IGHV3OR16-8A0A075B7F1 116 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 IGHV1-3A0A0C4DH29 117 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 A0A1B0GUH1 482 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 TMEM120BA0PK00 339 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 TSPAN11A1L157 253 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 ZNF98A6NK75 572 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 NME4O00746 187 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 TAAR5O14804 337 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 SERPINB7O75635 380 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 PGA4P0DJD7 388 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 PGA3P0DJD8 388 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 PGA5P0DJD9 388 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 PSMB5P28074 263 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 HTR1DP28221 377 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 CD70P32970 193 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 POLR2IP36954 125 aaKnown RBP1.97□□□□□ -2.09
USP40-209ENST00000452724 GCSAMLQ5JQS6 135 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 TMEM220Q6QAJ8 160 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 RTL4Q6ZR62 310 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 BZW1Q7L1Q6 419 aaKnown RBP1.97□□□□□ -2.09
USP40-209ENST00000452724 SSX9Q7RTT3 188 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 HORMAD1Q86X24 394 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 JAGN1Q8N5M9 183 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 C19orf18Q8NEA5 215 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 TSEN15Q8WW01 171 aaKnown RBP1.97□□□□□ -2.09
USP40-209ENST00000452724 IP6K3Q96PC2 410 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 FRMD8P1Q9BZ68 369 aaPredicted RBP1.97□□□□□ -2.09
USP40-209ENST00000452724 ZSCAN16Q9H4T2 348 aaPredicted RBP1.97□□□□□ -2.09
USP40-209ENST00000452724 CCNB1IP1Q9NPC3 277 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 RGS18Q9NS28 235 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 C20orf96Q9NUD7 363 aaPredicted RBP1.97□□□□□ -2.09
USP40-209ENST00000452724 RAB20Q9NX57 234 aa1.97□□□□□ -2.09
USP40-209ENST00000452724 RCL1Q9Y2P8 373 aaKnown RBP1.97□□□□□ -2.09
USP40-209ENST00000452724 DNALI1O14645 258 aaPredicted RBP1.96□□□□□ -2.1
USP40-209ENST00000452724 RAD1O60671 282 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 RFC3P40938 356 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 TNFSF9P41273 254 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 FABP6P51161 128 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 CUL2Q13617 745 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 DMC1Q14565 340 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms