RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 OR2G2Q8NGZ5 317 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 SLC25A40Q8TBP6 338 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 TMEM171Q8WVE6 324 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 AKAP1Q92667 903 aaKnown RBP eCLIP13.58□□□□□ -0.24
USP40-206ENST00000443711 NEUROG1Q92886 237 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 RNF166Q96A37 237 aaPredicted RBP13.58□□□□□ -0.24
USP40-206ENST00000443711 MARVELD3Q96A59 401 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 MARS2Q96GW9 593 aaKnown RBP13.58□□□□□ -0.24
USP40-206ENST00000443711 DHRS9Q9BPW9 319 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 OR2J1Q9GZK6 312 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 RGCCQ9H4X1 137 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 TRIM36Q9NQ86 728 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 LSM2Q9Y333 95 aaKnown RBP13.58□□□□□ -0.24
USP40-206ENST00000443711 A0A0U1RQV5 110 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 C5orf63A6NC05 138 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 HS3ST1O14792 307 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 TTRP02766 147 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 CFL1P23528 166 aaKnown RBP13.57□□□□□ -0.24
USP40-206ENST00000443711 GCH1P30793 250 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 APOBEC3AP31941 199 aaPredicted RBP13.57□□□□□ -0.24
USP40-206ENST00000443711 FABP6P51161 128 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 TAS2R43P59537 309 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 ERVS71-1P61550 626 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 EMX1Q04741 257 aaPredicted RBP13.57□□□□□ -0.24
USP40-206ENST00000443711 ACSM1Q08AH1 577 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 ALKBH1Q13686 389 aaKnown RBP13.57□□□□□ -0.24
USP40-206ENST00000443711 MED22Q15528 200 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 WDR38Q5JTN6 314 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 GLYATL3Q5SZD4 288 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 SPATA46Q5T0L3 261 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 FBXW12Q6X9E4 464 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 SYNPRQ8TBG9 265 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 FBXW5Q969U6 566 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 PPP1R14AQ96A00 147 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 SGK3Q96BR1 496 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 OR5M11Q96RB7 305 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 CLEC4MQ9H2X3 399 aaPredicted RBP13.57□□□□□ -0.24
USP40-206ENST00000443711 POFUT1Q9H488 388 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 OPA3Q9H6K4 179 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 ACOT13Q9NPJ3 140 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 FRRS1LQ9P0K9 344 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 ZNF319Q9P2F9 582 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 ZNF391Q9UJN7 358 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 SLC22A13Q9Y226 551 aa13.57□□□□□ -0.24
USP40-206ENST00000443711 TRBV2A0A0J9YWF9 115 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 OGG1O15527 345 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 LALBAP00709 142 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 RAC2P15153 192 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 ZNF250P15622 560 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 ANOS1P23352 680 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 KIR3DL2P43630 455 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 GTF2A1P52655 376 aaPredicted RBP13.56□□□□□ -0.24
USP40-206ENST00000443711 SELENOVP59797 346 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 NANOS3P60323 173 aaKnown RBP13.56□□□□□ -0.24
USP40-206ENST00000443711 BDH1Q02338 343 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 ZNF92Q03936 586 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 ADIPOQQ15848 244 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 MBNL2Q5VZF2 373 aaKnown RBP13.56□□□□□ -0.24
USP40-206ENST00000443711 MRPL21Q7Z2W9 205 aaKnown RBP13.56□□□□□ -0.24
USP40-206ENST00000443711 TMEM200AQ86VY9 491 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 PRSS35Q8N3Z0 413 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 OR2AE1Q8NHA4 323 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 KLF14Q8TD94 323 aaPredicted RBP13.56□□□□□ -0.24
USP40-206ENST00000443711 FCGR1BQ92637 280 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 MRPL24Q96A35 216 aaKnown RBP13.56□□□□□ -0.24
USP40-206ENST00000443711 SPSB4Q96A44 273 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 HAVCR1Q96D42 359 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 CMBLQ96DG6 245 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 REEP6Q96HR9 211 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 REPIN1Q9BWE0 567 aaKnown RBP13.56□□□□□ -0.24
USP40-206ENST00000443711 ISYNA1Q9NPH2 558 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 ST6GALNAC2Q9UJ37 374 aa13.56□□□□□ -0.24
USP40-206ENST00000443711 A0A1W2PPR1 153 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 MAGEA13PA6NCF6 341 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 RPSAP08865 295 aaKnown RBP13.55□□□□□ -0.24
USP40-206ENST00000443711 OR4A8P0C604 315 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 SERPINF1P36955 418 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 KLF3P57682 345 aaPredicted RBP13.55□□□□□ -0.24
USP40-206ENST00000443711 GK2Q14410 553 aaPredicted RBP13.55□□□□□ -0.24
USP40-206ENST00000443711 HLXQ14774 488 aaPredicted RBP13.55□□□□□ -0.24
USP40-206ENST00000443711 CDK5R1Q15078 307 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 GFOD2Q3B7J2 385 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 TMEM244Q5VVB8 128 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 ZNF787Q6DD87 383 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 HIST2H2BCQ6DN03 193 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 XAF1Q6GPH4 301 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 PGAP1Q75T13 922 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 ZNF367Q7RTV3 350 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 COMMD2Q86X83 199 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 FBXL14Q8N1E6 418 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 ZNF676Q8N7Q3 588 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 ZNF611Q8N823 705 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 OR5AK2Q8NH90 309 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 OR51E1Q8TCB6 317 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 ITFG2Q969R8 447 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 COMMD4Q9H0A8 199 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 FAIMQ9NVQ4 179 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 DUSP13Q9UII6 198 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 FZR1Q9UM11 496 aa13.55□□□□□ -0.24
USP40-206ENST00000443711 A0A1B0GVI7 797 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 159.4 ms