RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 GIFP27352 417 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 LOXL1Q08397 574 aaPredicted RBP15.85■□□□□ 0.13
SHH-203ENST00000435425 GFOD2Q3B7J2 385 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 FAM209AQ5JX71 171 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 LPCAT4Q643R3 524 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 KCTD18Q6PI47 426 aaPredicted RBP15.85■□□□□ 0.13
SHH-203ENST00000435425 SLC35F2Q8IXU6 374 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 ZNF540Q8NDQ6 660 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 SPRYD4Q8WW59 207 aaPredicted RBP15.85■□□□□ 0.13
SHH-203ENST00000435425 PGAM5Q96HS1 289 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 TBX5Q99593 518 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 ADGRL4Q9HBW9 690 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 AASSQ9UDR5 926 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 WARS2Q9UGM6 360 aaKnown RBP15.85■□□□□ 0.13
SHH-203ENST00000435425 LRP12Q9Y561 859 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 TEP1Q99973 2627 aaKnown RBP15.85■□□□□ 0.13
SHH-203ENST00000435425 IGHV4-61A0A0C4DH41 118 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 IQCF6A8MYZ5 107 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 H0YL77 283 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 CRYBB2P43320 205 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 GPR6P46095 362 aaPredicted RBP15.84■□□□□ 0.13
SHH-203ENST00000435425 HNRNPA0Q13151 305 aaKnown RBP15.84■□□□□ 0.13
SHH-203ENST00000435425 RIN1Q13671 783 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 TIGD6Q17RP2 521 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 RHOUQ7L0Q8 258 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 RFLNBQ8N5W9 214 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 OR10AD1Q8NGE0 317 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 OR13G1Q8NGZ3 307 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 CCL17Q92583 94 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 NARFLQ9H6Q4 476 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 SP140LQ9H930 580 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 TMEM100Q9NV29 134 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 IKZF2Q9UKS7 526 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 TMEM14AQ9Y6G1 99 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 TANC2Q9HCD6 1990 aa15.84■□□□□ 0.13
SHH-203ENST00000435425 DYSFO75923 2080 aa15.83■□□□□ 0.13
SHH-203ENST00000435425 LRP5LA4QPB2 252 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 ZNF670-ZNF695F2Z2N8 137 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 MAGEB4O15481 346 aaPredicted RBP15.83■□□□□ 0.12
SHH-203ENST00000435425 XRCC2O43543 280 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 HLA-DPB1P04440 258 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 HEXAP06865 529 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 ADH4P08319 380 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 SBK2P0C263 348 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 HTR1FP30939 366 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 ATP6V1E1P36543 226 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 RBMXP38159 391 aaKnown RBP15.83■□□□□ 0.12
SHH-203ENST00000435425 CXCR4P61073 352 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 MRPS11P82912 194 aaKnown RBP15.83■□□□□ 0.12
SHH-203ENST00000435425 HFEQ30201 348 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 AVPI1Q5T686 147 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 ITLN1Q8WWA0 313 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 TRUB1Q8WWH5 349 aaKnown RBP15.83■□□□□ 0.12
SHH-203ENST00000435425 SGK3Q96BR1 496 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 REPIN1Q9BWE0 567 aaKnown RBP15.83■□□□□ 0.12
SHH-203ENST00000435425 MROQ9BYG7 248 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 OR10A2Q9H208 303 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 ZNF319Q9P2F9 582 aa15.83■□□□□ 0.12
SHH-203ENST00000435425 IGHV3-64DA0A0J9YX35 117 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 CD300LBA8K4G0 201 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 PRR32B1ATL7 298 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 ENTPD6O75354 484 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 RP2O75695 350 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 CD55P08174 381 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 MVKQ03426 396 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 TMEM249Q2WGJ8 235 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 PRSS45Q7RTY3 260 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 ASB17Q8WXJ9 295 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 RFKQ969G6 155 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 REEP6Q96HR9 211 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 OR2V2Q96R30 315 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 OR8B4Q96RC9 309 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 APOL4Q9BPW4 351 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 SLC30A2Q9BRI3 323 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 FAM118AQ9NWS6 357 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 CLN6Q9NWW5 311 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 HAO2Q9NYQ3 351 aa15.82■□□□□ 0.12
SHH-203ENST00000435425 LOC100130705A0A1B0GUX0 176 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 E9PQ18 207 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 F5H5P2 479 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 MLNRO43193 412 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 CA6P23280 308 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 PEX2P28328 305 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 TMEM33P57088 247 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 PSMA6P60900 246 aaKnown RBP15.81■□□□□ 0.12
SHH-203ENST00000435425 ELF3P78545 371 aaPredicted RBP15.81■□□□□ 0.12
SHH-203ENST00000435425 KRTAP1-1Q07627 177 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 ZNF322Q6U7Q0 402 aaPredicted RBP15.81■□□□□ 0.12
SHH-203ENST00000435425 ZNF679Q8IYX0 411 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 ZNF555Q8NEP9 628 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 OR56B2PQ8NGI1 322 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 OR52H1Q8NGJ2 320 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 NIPAL2Q9H841 368 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 SMPD3Q9NY59 655 aaPredicted RBP15.81■□□□□ 0.12
SHH-203ENST00000435425 IL19Q9UHD0 177 aa15.81■□□□□ 0.12
SHH-203ENST00000435425 CLDN25C9JDP6 229 aa15.8■□□□□ 0.12
SHH-203ENST00000435425 PHYHO14832 338 aa15.8■□□□□ 0.12
SHH-203ENST00000435425 TNFRSF1AP19438 455 aa15.8■□□□□ 0.12
SHH-203ENST00000435425 CHN2P52757 468 aa15.8■□□□□ 0.12
SHH-203ENST00000435425 RIDAP52758 137 aaKnown RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms