RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 LMX1BO60663 402 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 IFNA6P05013 189 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 EIF1P41567 113 aaKnown RBP12.12□□□□□ -0.47
COL6A3-207ENST00000433762 ALDH3B1P43353 468 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 PRKXP51817 358 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 GRB2P62993 217 aaKnown RBP12.12□□□□□ -0.47
COL6A3-207ENST00000433762 FOXK1P85037 733 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 MYBPHQ13203 477 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 NKAIN1Q4KMZ8 207 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 PAN3Q58A45 887 aaKnown RBP12.12□□□□□ -0.47
COL6A3-207ENST00000433762 ARSKQ6UWY0 536 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 DEFB119Q8N690 84 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 OR4S1Q8NGB4 309 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 SSC4DQ8WTU2 575 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 MRPS24Q96EL2 167 aaKnown RBP12.12□□□□□ -0.47
COL6A3-207ENST00000433762 OXGR1Q96P68 337 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 VRK1Q99986 396 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-207ENST00000433762 PIGMQ9H3S5 423 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 GAREM1Q9H706 876 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 RYDENQ9NUL5 291 aaKnown RBP12.12□□□□□ -0.47
COL6A3-207ENST00000433762 HDGFL3Q9Y3E1 203 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 WIF1Q9Y5W5 379 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 LHFPL6Q9Y693 200 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 SPAG17Q6Q759 2223 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 TEX46H3BTG2 121 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 TRAF3IP2O43734 574 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-207ENST00000433762 GIMD1P0DJR0 217 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 DLSTP36957 453 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 PTGDSP41222 190 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 STARP49675 285 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 AFF3P51826 1226 aaKnown RBP12.12□□□□□ -0.47
COL6A3-207ENST00000433762 CLRN1P58418 232 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 ZNF273Q14593 569 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 ARL6IP1Q15041 203 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 AWAT2Q6E213 333 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 DOK3Q7L591 496 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 WDFY1Q8IWB7 410 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 CHST4Q8NCG5 386 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 OR10K1Q8NGX5 313 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 SLC22A8Q8TCC7 542 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 OCSTAMPQ9BR26 566 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 LPAR5Q9H1C0 372 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 FBXO4Q9UKT5 387 aa12.12□□□□□ -0.47
COL6A3-207ENST00000433762 RALGAPA1Q6GYQ0 2036 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 POM121CA8CG34 1229 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 F8VVB4 439 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 F8VWA3 439 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 TRIM77I1YAP6 450 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 SULT2B1O00204 365 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 SSX5O60225 188 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 CA11O75493 328 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 ZFAND5O76080 213 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 CNR1P21554 472 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 HRH1P35367 487 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 EMP2P54851 167 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 TMEM128Q5BJH2 165 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 CD163Q86VB7 1156 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 ANGPTL5Q86XS5 388 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 OR5AS1Q8N127 324 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 SLC25A45Q8N413 288 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 INO80EQ8NBZ0 244 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-207ENST00000433762 OR56B1Q8NGI3 324 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 TERB2Q8NHR7 220 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 POC1BQ8TC44 478 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 C1orf147Q96MC9 270 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-207ENST00000433762 NPAS1Q99742 590 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 ARPC5LQ9BPX5 153 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 WDR77Q9BQA1 342 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-207ENST00000433762 SLC7A5P2Q9GIP4 190 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 SLC26A1Q9H2B4 701 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 ZMAT3Q9HA38 289 aaKnown RBP12.11□□□□□ -0.47
COL6A3-207ENST00000433762 KLRF1Q9NZS2 232 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 C19orf25Q9UFG5 118 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-207ENST00000433762 ZNF230Q9UIE0 474 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-207ENST00000433762 GPR160Q9UJ42 338 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 UNC13CQ8NB66 2214 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 TRBV11-1A0A0K0K1C0 115 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 LOC101059948A0A1B0GTJ6 334 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 MPTX1A8MV57 137 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 ZNF354AO60765 605 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-207ENST00000433762 CRHP06850 196 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 GP1BAP07359 652 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 HIST1H1DP16402 221 aaKnown RBP12.11□□□□□ -0.47
COL6A3-207ENST00000433762 CTRB1P17538 263 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 LSM6P62312 80 aaKnown RBP12.11□□□□□ -0.47
COL6A3-207ENST00000433762 GABREP78334 506 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 PPA1Q15181 289 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 CTRB2Q6GPI1 263 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 RTL6Q6ICC9 239 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 FAM122CQ6P4D5 195 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 Q6ZSR3 168 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 OR13C9Q8NGT0 318 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 DMRTA2Q96SC8 542 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 TMEM185BQ9H7F4 350 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 VDAC3Q9Y277 283 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 MRPS28Q9Y2Q9 187 aaKnown RBP12.11□□□□□ -0.47
COL6A3-207ENST00000433762 KCNK7Q9Y2U2 307 aa12.11□□□□□ -0.47
COL6A3-207ENST00000433762 OR2AT4A6NND4 320 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 EFNA2O43921 213 aa12.1□□□□□ -0.47
COL6A3-207ENST00000433762 DCNP07585 359 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms