RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ARPC2O15144 300 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 FABP3P05413 133 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 CD200P41217 278 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 MTNR1AP48039 350 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 PRKXP51817 358 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 TPTEP56180 551 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 MALLQ13021 153 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 ZNF181Q2M3W8 571 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 SLC36A3Q495N2 470 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 HSP90B2PQ58FF3 399 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 GLYATL3Q5SZD4 288 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 PGBD2Q6P3X8 592 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 ZNF620Q6ZNG0 422 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 ZNF826PQ6ZT77 177 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 NLRC3Q7RTR2 1065 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 FGFRL1Q8N441 504 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 PROKR2Q8NFJ6 384 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 OR8D4Q8NGM9 314 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 OR11L1Q8NGX0 322 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 GNPDA2Q8TDQ7 276 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 ZDHHC16Q969W1 377 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 TMIGD2Q96BF3 282 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 ZNF799Q96GE5 643 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 ADAT1Q9BUB4 502 aaKnown RBP9.62□□□□□ -0.87
USP4-204ENST00000416417 GORASP2Q9H8Y8 452 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 MGAM2Q2M2H8 2515 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 IGHV3OR15-7A0A075B7D8 119 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 FCN3O75636 299 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 GYPBP06028 91 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 GRPP07492 148 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 ZNF823P16415 610 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 GATA4P43694 442 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 SMIM11AP58511 58 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 IL13RA1P78552 427 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 ECH1Q13011 328 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DCDC5Q6ZRR9 648 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 C9orf139Q6ZV77 190 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 ZDHHC21Q8IVQ6 265 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 PDZD9Q8IXQ8 264 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 ZNF511Q8NB15 262 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 Q8TCH9 128 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 MCUR1Q96AQ8 359 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 NSMCE2Q96MF7 247 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 CDRT15Q96T59 188 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 PPP1R3EQ9H7J1 279 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 ZNF696Q9H7X3 374 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 SMURF1Q9HCE7 757 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 CENPMQ9NSP4 180 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 ARL8BQ9NVJ2 186 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 C1orf123Q9NWV4 160 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 A0A1B0GW55 424 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 FAM181BA6NEQ2 426 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 GGT3PA6NGU5 568 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 ADAM20O43506 726 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 GYPAP02724 150 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 SPARCP09486 303 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DUX4L2P0CJ85 424 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DUX4L3P0CJ86 424 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DUX4L4P0CJ87 422 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DUX4L5P0CJ88 424 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DUX4L6P0CJ89 424 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DUX4L7P0CJ90 424 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 PPIAL4GP0DN37 164 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 CLUP10909 449 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 PRDX6P30041 224 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 PRB3Q04118 309 aaPredicted RBP9.61□□□□□ -0.87
USP4-204ENST00000416417 TSPAN31Q12999 210 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 OR8B8Q15620 311 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 C16orf87Q6PH81 154 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DUX4L9Q6RFH8 374 aaPredicted RBP9.61□□□□□ -0.87
USP4-204ENST00000416417 CYP2R1Q6VVX0 501 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DCXRQ7Z4W1 244 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 KIR3DL3Q8N743 410 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 SLC37A3Q8NCC5 494 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DDOQ99489 341 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 BTBD10Q9BSF8 475 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 ZMAT3Q9HA38 289 aaKnown RBP9.61□□□□□ -0.87
USP4-204ENST00000416417 RNF7Q9UBF6 113 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 DUX4Q9UBX2 424 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 CD300AQ9UGN4 299 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 MAGEL2Q9UJ55 1249 aa9.61□□□□□ -0.87
USP4-204ENST00000416417 TRRAPQ9Y4A5 3859 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 A6NLC8 198 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 CLDN34H7C241 214 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 LGALS8O00214 317 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 BHLHE40O14503 412 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 PHYHO14832 338 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 HSD17B1P14061 328 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 CFHR2P36980 270 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 PSMB10P40306 273 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 ZNF362Q5T0B9 420 aaPredicted RBP9.6□□□□□ -0.87
USP4-204ENST00000416417 GPR157Q5UAW9 335 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 FIP1L1Q6UN15 594 aaKnown RBP9.6□□□□□ -0.87
USP4-204ENST00000416417 TREML4Q6UXN2 200 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 CELF2-AS1Q8N7Q2 184 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 OR56B2PQ8NGI1 322 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 SPTSSAQ969W0 71 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 TBX15Q96SF7 602 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 COPS4Q9BT78 406 aa9.6□□□□□ -0.87
USP4-204ENST00000416417 CHIAQ9BZP6 476 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms