RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 MSTNO14793 375 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 GSTZ1O43708 216 aaPredicted RBP11.76□□□□□ -0.53
LIMS1-204ENST00000409441 CSNK1A1P48729 337 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 HIST3H3Q16695 136 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 RSBN1Q5VWQ0 802 aaPredicted RBP11.76□□□□□ -0.53
LIMS1-204ENST00000409441 LUZP2Q86TE4 346 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 GPR137CQ8N3F9 429 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 RELL2Q8NC24 303 aaPredicted RBP11.76□□□□□ -0.53
LIMS1-204ENST00000409441 OR6F1Q8NGZ6 308 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 LGALS14Q8TCE9 139 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 CA5BP1Q8WTZ4 195 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 TMEM54Q969K7 222 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 RBP7Q96R05 134 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 ABHD1Q96SE0 405 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 GFI1Q99684 422 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 C7orf50Q9BRJ6 194 aaKnown RBP11.76□□□□□ -0.53
LIMS1-204ENST00000409441 MARVELD1Q9BSK0 173 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 LINC00470Q9BZP3 86 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 ELOVL3Q9HB03 270 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 JKAMPQ9P055 326 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 FOXD3Q9UJU5 478 aaPredicted RBP11.76□□□□□ -0.53
LIMS1-204ENST00000409441 PAIP2BQ9ULR5 123 aaKnown RBP11.76□□□□□ -0.53
LIMS1-204ENST00000409441 ETV7Q9Y603 341 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 HIVEP3Q5T1R4 2406 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 PCNX1Q96RV3 2341 aa11.76□□□□□ -0.53
LIMS1-204ENST00000409441 EEF1E1-BLOC1S5C9J1V9 151 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 EEF1E1O43324 174 aaKnown RBP11.75□□□□□ -0.53
LIMS1-204ENST00000409441 KHDRBS3O75525 346 aaKnown RBP11.75□□□□□ -0.53
LIMS1-204ENST00000409441 TPPPO94811 219 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 CNOT4O95628 575 aaKnown RBP11.75□□□□□ -0.53
LIMS1-204ENST00000409441 GPANK1O95872 356 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 QDPRP09417 244 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 SPARCP09486 303 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 PSKH1P11801 424 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 RIDAP52758 137 aaKnown RBP11.75□□□□□ -0.53
LIMS1-204ENST00000409441 ADAM8P78325 824 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 FAPQ12884 760 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 MEP1BQ16820 701 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 THEM4Q5T1C6 240 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 ZNF474Q6S9Z5 364 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-204ENST00000409441 STAC2Q6ZMT1 411 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 Q6ZT83 130 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 BEND4Q6ZU67 534 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 SYT9Q86SS6 491 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 PRSS35Q8N3Z0 413 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 OR52N5Q8NH56 324 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 MCHR2Q969V1 340 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 CRLF2Q9HC73 371 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 RELNP78509 3460 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 CENPXA8MT69 81 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 SULT1B1O43704 296 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 ORC5O43913 435 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 HRGP04196 525 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 ZNF823P16415 610 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 AGAP20933 346 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 CFPP27918 469 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 KIR3DL2P43630 455 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 BTG1P62324 171 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 EIF2B1Q14232 305 aaKnown RBP11.75□□□□□ -0.53
LIMS1-204ENST00000409441 GPR176Q14439 515 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 CDSNQ15517 529 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 PCK2Q16822 640 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 WDR38Q5JTN6 314 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 DEGS2Q6QHC5 323 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 LINGO2Q7L985 606 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 KRT77Q7Z794 578 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 LRRTM1Q86UE6 522 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 GABRG1Q8N1C3 465 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 NOXO1Q8NFA2 376 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 SLC26A10Q8NG04 563 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 ITLN2Q8WWU7 325 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-204ENST00000409441 RAB40AQ8WXH6 277 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 CREB3L1Q96BA8 519 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 ALKBH3Q96Q83 286 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-204ENST00000409441 AMELYQ99218 206 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 ABCG5Q9H222 651 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 GPR35Q9HC97 309 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 COA3Q9Y2R0 106 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-204ENST00000409441 CACNG2Q9Y698 323 aa11.75□□□□□ -0.53
LIMS1-204ENST00000409441 MYO18BQ8IUG5 2567 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 ZNF587BE7ETH6 402 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 RPL36A-HNRNPH2H7BZ11 118 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 AGFG2O95081 481 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 SLC6A1P30531 599 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 RPS27P42677 84 aaKnown RBP11.74□□□□□ -0.53
LIMS1-204ENST00000409441 FMODQ06828 376 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 HES5Q5TA89 166 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 ABHD12BQ7Z5M8 362 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-204ENST00000409441 CMTM4Q8IZR5 234 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 INTS1Q8N201 2190 aaKnown RBP11.74□□□□□ -0.53
LIMS1-204ENST00000409441 ZNF808Q8N4W9 903 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-204ENST00000409441 ZNF433Q8N7K0 673 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-204ENST00000409441 C15orf40Q8WUR7 153 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 SLC7A6Q92536 515 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 YIPF5Q969M3 257 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 ZNF837Q96EG3 531 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-204ENST00000409441 ABHD6Q9BV23 337 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 RBM24Q9BX46 236 aaKnown RBP11.74□□□□□ -0.53
LIMS1-204ENST00000409441 ULBP2Q9BZM5 246 aa11.74□□□□□ -0.53
LIMS1-204ENST00000409441 KCNJ16Q9NPI9 418 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms