RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CD1DP15813 335 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 TBPP20226 339 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 WARSP23381 471 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 LOXP28300 417 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 GNRHRP30968 328 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 AP1S2P56377 157 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 OR10A3P58181 314 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 LSM6P62312 80 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 DHODHQ02127 395 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 PRKCDQ05655 676 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 TNFRSF9Q07011 255 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ASAH1Q13510 395 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 RFX4Q33E94 735 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MS4A13Q5J8X5 152 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 CCNJQ5T5M9 372 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF544Q6NX49 715 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 IDO2Q6ZQW0 420 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 C3orf62Q6ZUJ4 267 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MRPL52Q86TS9 123 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 BBS7Q8IWZ6 715 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 FBXO16Q8IX29 292 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 PUSL1Q8N0Z8 303 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 UBL4BQ8N7F7 174 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF557Q8N988 423 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 RNASE11Q8TAA1 199 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF564Q8TBZ8 553 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 SFXN5Q8TD22 340 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 KCTD4Q8WVF5 259 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 RASSF5Q8WWW0 418 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 FBXO17Q96EF6 278 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MS4A14Q96JA4 679 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF488Q96MN9 340 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 TSC22D3Q99576 134 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 TM2D1Q9BX74 207 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 HES7Q9BYE0 225 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 BARHL1Q9BZE3 327 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 RDH14Q9HBH5 336 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 SIX2Q9NPC8 291 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZDHHC4Q9NPG8 344 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 GIN1Q9NXP7 522 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 PRODH2Q9UF12 536 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 SLC2A6Q9UGQ3 507 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MLXQ9UH92 298 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF337Q9Y3M9 751 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 EP400Q96L91 3159 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 A0A1B0GWB2 263 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 IGLON5A6NGN9 336 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 A6NIZ1 184 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF705EA8MWA4 302 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 KPNA3O00505 521 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MPZL2O60487 215 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 SHOX2O60902 331 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 PFDN1O60925 122 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 SUPT3HO75486 399 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 GATBO75879 557 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 TCRBP04435 133 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 EDN1P05305 212 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 LIPCP11150 499 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 HIST1H1CP16403 213 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MPIP34949 423 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MAGEA12P43365 314 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 GSK3BP49841 420 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MFAP2P55001 183 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 BIDP55957 195 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 AP1S1P61966 158 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 HMGCS1Q01581 520 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 AESQ08117 197 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ELAVL2Q12926 359 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 AQP6Q13520 282 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 TAF1AQ15573 450 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF726P1Q15940 193 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 POU2AF1Q16633 256 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 OR10J3Q5JRS4 329 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 FAM219BQ5XKK7 198 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 WDR82Q6UXN9 313 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 S100A7AQ86SG5 101 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 TRAPPC5Q8IUR0 188 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 NAXDQ8IW45 347 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 WDFY1Q8IWB7 410 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 CCDC54Q8NEL0 328 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 OR2AE1Q8NHA4 323 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MRGPRDQ8TDS7 321 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 CREB3L1Q96BA8 519 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 PPWD1Q96BP3 646 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 TCEAL4Q96EI5 215 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF486Q96H40 463 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ST6GAL2Q96JF0 529 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 SCGB3A2Q96PL1 93 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 KCTD14Q9BQ13 255 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 TIPINQ9BVW5 301 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 HCAR1Q9BXC0 346 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MRPS26Q9BYN8 205 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 HOXD1Q9GZZ0 328 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 PCBD2Q9H0N5 130 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 OR51J1Q9H342 316 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 EXOSC3Q9NQT5 275 aaKnown RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 SLC2A9Q9NRM0 540 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF446Q9NWS9 450 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF107Q9UII5 783 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 GUCA1BQ9UMX6 200 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms