RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TRIM64BA6NI03 449 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 GMDSO60547 372 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 SEC14L2O76054 403 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 CLIC3O95833 236 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 PLAUP00749 431 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 CD79AP11912 226 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 IL5RAQ01344 420 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 MFGE8Q08431 387 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-202ENST00000394943 MLLT11Q13015 90 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-202ENST00000394943 C11orf91Q3C1V1 193 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 LINC00346Q8IVM7 164 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 OR8G5Q8NG78 346 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 OR2G2Q8NGZ5 317 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 SMIM19Q96E16 107 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 MND1Q9BWT6 205 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 PBOV1Q9GZY1 135 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 BABAM2Q9NXR7 383 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 PLEK2Q9NYT0 353 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 PURGQ9UJV8 347 aaKnown RBP5.99□□□□□ -1.45
LIMA1-202ENST00000394943 STARD10Q9Y365 291 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 FLNCQ14315 2725 aa5.99□□□□□ -1.45
LIMA1-202ENST00000394943 TMEM212A6NML5 194 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 ATP6V1G2-DDX39BF2Z307 99 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 NOS1APO75052 506 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 RP2O75695 350 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 SERPINI2O75830 405 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 PATE4P0C8F1 98 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 ALDH3B1P43353 468 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 WNT4P56705 351 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 NANOS3P60323 173 aaKnown RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 TUBA1BP68363 451 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 ALKBH1Q13686 389 aaKnown RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 GK2Q14410 553 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 TRAM1Q15629 374 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 LRRC36Q1X8D7 754 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 TUSC1Q2TAM9 212 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 AGAP6Q5VW22 663 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 Q6ZR03 302 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 TUBA1AQ71U36 451 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 LHFPL3Q86UP9 236 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 WFDC8Q8IUA0 241 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 ZNF283Q8N7M2 679 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 DNAAF1Q8NEP3 725 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 OR51G2Q8NGK0 314 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 NEU4Q8WWR8 484 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 RGP1Q92546 391 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 MRPL37Q9BZE1 423 aaKnown RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 FAIMQ9NVQ4 179 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 EIF3KQ9UBQ5 218 aaKnown RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 CMAHPQ9Y471 501 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 CASKO14936 926 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 LHBP01229 141 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 SMIM18P0DKX4 95 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 ST3GAL4Q11206 333 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 PSG7Q13046 419 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 LIPNQ5VXI9 398 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 ASPHD2Q6ICH7 369 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 CORO6Q6QEF8 472 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 DOK3Q7L591 496 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 KLHL36Q8N4N3 616 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 CSNK2A3Q8NEV1 391 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 OR6K6Q8NGW6 343 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 MUL1Q969V5 352 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 PIK3IP1Q96FE7 263 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 CDADC1Q9BWV3 514 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 MROQ9BYG7 248 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 RNF121Q9H920 327 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 CDH20Q9HBT6 801 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 BLOC1S6Q9UL45 172 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 PLEKHA6Q9Y2H5 1048 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 MPC1Q9Y5U8 109 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 GCN1Q92616 2671 aaKnown RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 USP9XQ93008 2570 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 C5orf49A4QMS7 147 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 C5orf63A6NC05 138 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 FAM171A2A8MVW0 826 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 DHRS3O75911 302 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 MT-ND5P03915 603 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 DBHP09172 617 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 H2BFMP0C1H6 154 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 PSMA1P25786 263 aaKnown RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 SERPINF1P36955 418 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 MPV17P39210 176 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 IDH3GP51553 393 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 PAX5Q02548 391 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 MED21Q13503 144 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 ZNF718Q3SXZ3 478 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 WDR38Q5JTN6 314 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 RGS7BPQ6MZT1 257 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-202ENST00000394943 SPARTQ8N0X7 666 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 SPERTQ8NA61 448 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 OR10A2Q9H208 303 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 HES4Q9HCC6 221 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 ACOT13Q9NPJ3 140 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 IL19Q9UHD0 177 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 OR52A1Q9UKL2 312 aa5.98□□□□□ -1.45
LIMA1-202ENST00000394943 TPRP12270 2363 aaKnown RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 TMEM210A6NLX4 147 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 NGFP01138 241 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 CSF3P09919 207 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms