RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SMIM15Q7Z3B0 74 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 C1orf87Q8N0U7 546 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 SIRT6Q8N6T7 355 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 RDH5Q92781 318 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 ORAI1Q96D31 301 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 WDR89Q96FK6 387 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 ZNF75AQ96N20 296 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 C12orf49Q9H741 205 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 PRDM7Q9NQW5 492 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 SLCO1C1Q9NYB5 712 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 MRPS2Q9Y399 296 aaKnown RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 STRAPQ9Y3F4 350 aaKnown RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 HS3ST1O14792 307 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 HRO43593 1189 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 PLRG1O43660 514 aaKnown RBP10.34□□□□□ -0.75
PTPRF-203ENST00000372407 NXPH3O95157 252 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 WNT11O96014 354 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 ELLP55199 621 aaPredicted RBP10.34□□□□□ -0.75
PTPRF-203ENST00000372407 WNT3P56703 355 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 UBE2IP63279 158 aaKnown RBP10.34□□□□□ -0.75
PTPRF-203ENST00000372407 HYAL1Q12794 435 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 GPNMBQ14956 572 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 PRAMEF5Q5TYX0 476 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 PRAMEF6Q5VXH4 476 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 MFSD4AQ8N468 514 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 ARHGEF39Q8N4T4 335 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 PPP1R1CQ8WVI7 109 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 TTC9Q92623 222 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 PBOV1Q9GZY1 135 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 AK3Q9UIJ7 227 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 RNF150Q9ULK6 438 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 FAM166BA8MTA8 275 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 DHHO43323 396 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 NME2P1O60361 137 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 HMGA2P52926 109 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 ZNF468Q5VIY5 522 aaPredicted RBP10.34□□□□□ -0.75
PTPRF-203ENST00000372407 CATSPERDQ86XM0 798 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 C2orf50Q96LR7 162 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 C10orf90Q96M02 699 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 ARHGDIGQ99819 225 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 SHARPINQ9H0F6 387 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 MED9Q9NWA0 146 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 A0A087WUJ7 227 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 EMDP50402 254 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 TOMM34Q15785 309 aaPredicted RBP10.34□□□□□ -0.75
PTPRF-203ENST00000372407 LAIR1Q6GTX8 287 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 LYG2Q86SG7 212 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 UBALD2Q8IYN6 164 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 C8orf44Q96CB5 159 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 USB1Q9BQ65 265 aaKnown RBP10.34□□□□□ -0.75
PTPRF-203ENST00000372407 PLSCR3Q9NRY6 295 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 SIGLEC7Q9Y286 467 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 PPIL1Q9Y3C6 166 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 FRG2CA6NGY1 282 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 UMAD1C9J7I0 102 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 BHLHE40O14503 412 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 OR2C1O95371 312 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 OR8U8P0C7N1 319 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 IL3RAP26951 378 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 GABRA4P48169 554 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 SLC10A1Q14973 349 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 OR8B8Q15620 311 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 LINC00303Q3SY05 128 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 ZNF628Q5EBL2 1059 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 OR4Q3Q8NH05 313 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 NT5CQ8TCD5 201 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 FBXW5Q969U6 566 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 THOC3Q96J01 351 aaKnown RBP10.34□□□□□ -0.75
PTPRF-203ENST00000372407 WDFY2Q96P53 400 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 MENTQ9BUN1 341 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 POMT2Q9UKY4 750 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 HDGFL3Q9Y3E1 203 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 KCNE3Q9Y6H6 103 aa10.34□□□□□ -0.75
PTPRF-203ENST00000372407 GVINP1Q7Z2Y8 2422 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 IL5P05113 134 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 GALP22466 123 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 TGM1P22735 817 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 GFERP55789 205 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 SPANXN5Q5MJ07 72 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 TMEM268Q5VZI3 342 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 ZNF626Q68DY1 528 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 SSX9Q7RTT3 188 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 LIMS2Q7Z4I7 341 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 LSRQ86X29 649 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-203ENST00000372407 BATF2Q8N1L9 274 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 ARRDC1Q8N5I2 433 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 CMTM2Q8TAZ6 248 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 GPX8Q8TED1 209 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 RTN4IP1Q8WWV3 396 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-203ENST00000372407 LHX4Q969G2 390 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 OR8B4Q96RC9 309 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 TWSG1Q9GZX9 223 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 CRLF2Q9HC73 371 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 DOCK3Q8IZD9 2030 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 ARPC3O15145 178 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 XRCC2O43543 280 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 CXCL13O43927 109 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 PDGFBP01127 241 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-203ENST00000372407 IL34Q6ZMJ4 242 aa10.33□□□□□ -0.76
PTPRF-203ENST00000372407 LHFPL2Q6ZUX7 228 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms