RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TPTEP56180 551 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 PRSS12P56730 875 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 TMEM33P57088 247 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 ESRRGP62508 458 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 PPP2R2BQ00005 443 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 HNRNPA0Q13151 305 aaKnown RBP13.42□□□□□ -0.26
CLN3-201ENST00000333496 SNAI3Q3KNW1 292 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 OR2T2Q6IF00 324 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 OR5AS1Q8N127 324 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 OR6N2Q8NGY6 317 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 AMELYQ99218 206 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 RBM4BQ9BQ04 359 aaKnown RBP13.42□□□□□ -0.26
CLN3-201ENST00000333496 YAE1D1Q9NRH1 226 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 CENPMQ9NSP4 180 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 SMPD3Q9NY59 655 aaPredicted RBP13.42□□□□□ -0.26
CLN3-201ENST00000333496 TVP23BQ9NYZ1 205 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 TMEFF2Q9UIK5 374 aaPredicted RBP13.42□□□□□ -0.26
CLN3-201ENST00000333496 CCDC160A6NGH7 325 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 PRODHO43272 600 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 EIF2B1Q14232 305 aaKnown RBP13.42□□□□□ -0.26
CLN3-201ENST00000333496 GK2Q14410 553 aaPredicted RBP13.42□□□□□ -0.26
CLN3-201ENST00000333496 SNAPC1Q16533 368 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 KLHL12Q53G59 568 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 CYB5R2Q6BCY4 276 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 SPTSSAQ969W0 71 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 MSI2Q96DH6 328 aaKnown RBP13.42□□□□□ -0.26
CLN3-201ENST00000333496 DIRC2Q96SL1 478 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 ABHD6Q9BV23 337 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 TREM2Q9NZC2 230 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 NAV3Q8IVL0 2385 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 A0A087WXM4 84 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 ZNF878C9JN71 531 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 PPIHO43447 177 aaKnown RBP13.41□□□□□ -0.26
CLN3-201ENST00000333496 SELENOFO60613 162 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 ZNF16P17020 682 aaPredicted RBP13.41□□□□□ -0.26
CLN3-201ENST00000333496 RBMXP38159 391 aaKnown RBP13.41□□□□□ -0.26
CLN3-201ENST00000333496 ALDH3B2P48448 385 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 GZMKP49863 264 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 PRKXP51817 358 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 EFNB1P98172 346 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 C11orf91Q3C1V1 193 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 ZMAT1Q5H9K5 638 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 SPATC1Q76KD6 591 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 CXXC5Q7LFL8 322 aaKnown RBP13.41□□□□□ -0.26
CLN3-201ENST00000333496 OR2Z1Q8NG97 314 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 PLEKHA8Q96JA3 519 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 RDH12Q96NR8 316 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 KCNJ15Q99712 375 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 COPS4Q9BT78 406 aa13.41□□□□□ -0.26
CLN3-201ENST00000333496 TRIM64CA6NLI5 447 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 ZAR1LA6NP61 321 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 A8MV72 311 aaPredicted RBP13.4□□□□□ -0.26
CLN3-201ENST00000333496 IQCF6A8MYZ5 107 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 PRKYO43930 277 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 SLC6A9P48067 706 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 TNFAIP6P98066 277 aaPredicted RBP13.4□□□□□ -0.26
CLN3-201ENST00000333496 SLC35D3Q5M8T2 416 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 DRAM2Q6UX65 266 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 SHFQ7M4L6 423 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 OR8G5Q8NG78 346 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 CLDND2Q8NHS1 167 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 RNF133Q8WVZ7 376 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 ELMOD3Q96FG2 381 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 TEX12Q9BXU0 123 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 NARFLQ9H6Q4 476 aa13.4□□□□□ -0.26
CLN3-201ENST00000333496 CCDC182A6NF36 153 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 M0R129 80 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 MLNRO43193 412 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 SLC2A1P11166 492 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 POLR2IP36954 125 aaKnown RBP13.39□□□□□ -0.27
CLN3-201ENST00000333496 CAPGP40121 348 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 HFEQ30201 348 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 SLX4IPQ5VYV7 408 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 DHRSXQ8N5I4 330 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 BHLHE23Q8NDY6 225 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 OR2AE1Q8NHA4 323 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 OTOSQ8NHW6 89 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 CCL17Q92583 94 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 HPS1Q92902 700 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 TEAD3Q99594 435 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 SLC30A2Q9BRI3 323 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 EGLN1Q9GZT9 426 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 DCAF16Q9NXF7 216 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 RSL24D1Q9UHA3 163 aaKnown RBP13.39□□□□□ -0.27
CLN3-201ENST00000333496 A0A1B0GWJ7 208 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 H0YL77 283 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 CRLF1O75462 422 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 IGFBP5P24593 272 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 NAA10P41227 235 aaPredicted RBP13.39□□□□□ -0.27
CLN3-201ENST00000333496 GRB2P62993 217 aaKnown RBP13.39□□□□□ -0.27
CLN3-201ENST00000333496 ZNF92Q03936 586 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 TAF13Q15543 124 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 AVPI1Q5T686 147 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 C12orf73Q69YU5 71 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 RHOUQ7L0Q8 258 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 BCDIN3DQ7Z5W3 292 aaKnown RBP13.39□□□□□ -0.27
CLN3-201ENST00000333496 ITLN1Q8WWA0 313 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 C1orf159Q96HA4 380 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 ZNF582Q96NG8 517 aaPredicted RBP13.39□□□□□ -0.27
CLN3-201ENST00000333496 REPIN1Q9BWE0 567 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms