RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ABCA7Q8IZY2 2146 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 OR4S1Q8NGB4 309 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 OR10D4PQ8NGN7 298 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 CMBLQ96DG6 245 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 BOLA1Q9Y3E2 137 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 TMEM218A2RU14 115 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 PRAMEF25A6NGN4 478 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 FAM74A7A6NL05 159 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 DOK2O60496 412 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 NQO2P16083 231 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 AGFG1P52594 562 aaKnown RBP13.03□□□□□ -0.32
COL7A1-201ENST00000328333 C1orf220Q5T0J3 134 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 PRAMEF5Q5TYX0 476 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 PRAMEF6Q5VXH4 476 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 GPRIN1Q7Z2K8 1008 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 SCMH1Q96GD3 660 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 C1orf140Q5VVS0 124 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 CNEP1R1Q8N9A8 125 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 OR10X1Q8NGY0 326 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 TSACCQ96A04 125 aaPredicted RBP13.03□□□□□ -0.32
COL7A1-201ENST00000328333 SLCO3A1Q9UIG8 710 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 MED25Q71SY5 747 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 WSB1Q9Y6I7 421 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 J3KTA2 159 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 HSD17B6O14756 317 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 GJB5O95377 273 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 RPL27P61353 136 aaKnown RBP13.03□□□□□ -0.32
COL7A1-201ENST00000328333 NHLH1Q02575 133 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 NHLH2Q02577 135 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 CCDC190Q86UF4 302 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 KIR2DS2P43631 304 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 ETFDHQ16134 617 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 TMEM229BQ8NBD8 167 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF355PQ9NSJ1 428 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 NAT8BQ9UHF3 227 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 NBASA2RRP1 2371 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 UTS2O95399 124 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 HLA-BQ31612 363 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 LSMEM1Q8N8F7 131 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 FAM71CQ8NEG0 241 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 OR2M3Q8NG83 312 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 PP6455Q8WZ26 134 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 OR52E1Q8NGJ3 308 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 HS3ST2Q9Y278 367 aa13.03□□□□□ -0.32
COL7A1-201ENST00000328333 HSPB6O14558 160 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 ENSAO43768 121 aaKnown RBP13.02□□□□□ -0.32
COL7A1-201ENST00000328333 FGF9P31371 208 aaPredicted RBP13.02□□□□□ -0.32
COL7A1-201ENST00000328333 CD70P32970 193 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 LGALS4P56470 323 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 TMEM189-UBE2V1I3L0A0 370 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 SLC25A6P12236 298 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF718Q3SXZ3 478 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 AAED1Q7RTV5 226 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 MAML2Q8IZL2 1156 aaPredicted RBP13.02□□□□□ -0.32
COL7A1-201ENST00000328333 NUDCD2Q8WVJ2 157 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 SLCO1B1Q9Y6L6 691 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 CLEC18AA5D8T8 446 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 CLEC18CQ8NCF0 446 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 OR5D18Q8NGL1 313 aa13.02□□□□□ -0.32
COL7A1-201ENST00000328333 MBPP02686 304 aaPredicted RBP13.02□□□□□ -0.33
COL7A1-201ENST00000328333 SLC48A1Q6P1K1 146 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 CD99L2Q8TCZ2 262 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 GPR87Q9BY21 358 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 CASP8AP2Q9UKL3 1982 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 SLC22A20A6NK97 555 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 TNFRSF4P43489 277 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM241Q24JQ0 296 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 DPPA3Q6W0C5 159 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 HTR3DQ70Z44 454 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 APCDD1Q8J025 514 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 PACRGQ96M98 296 aaPredicted RBP13.02□□□□□ -0.33
COL7A1-201ENST00000328333 TNFRSF13CQ96RJ3 184 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 SYT11Q9BT88 431 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 MS4A8Q9BY19 250 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 ZNF107Q9UII5 783 aaPredicted RBP13.02□□□□□ -0.33
COL7A1-201ENST00000328333 ANKRD61A6NGH8 418 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 XRCC2O43543 280 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 RAD52P43351 418 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 CLDN17P56750 224 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 DSC1Q08554 894 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 PCNPQ8WW12 178 aaKnown RBP13.02□□□□□ -0.33
COL7A1-201ENST00000328333 CYSLTR2Q9NS75 346 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 SIRT3Q9NTG7 399 aaPredicted RBP13.02□□□□□ -0.33
COL7A1-201ENST00000328333 SLC23A1Q9UHI7 598 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 RPL11P62913 178 aaKnown RBP13.02□□□□□ -0.33
COL7A1-201ENST00000328333 PAX5Q02548 391 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 DRAM2Q6UX65 266 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 ST8SIA1Q92185 356 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 TIMD4Q96H15 378 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 ADGRL4Q9HBW9 690 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 CHST11Q9NPF2 352 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 KCND3Q9UK17 655 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 NOSIPQ9Y314 301 aaKnown RBP13.02□□□□□ -0.33
COL7A1-201ENST00000328333 MBTPS2O43462 519 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 LRP3O75074 770 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 RXFP4Q8TDU9 374 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 DYRK2Q92630 601 aa13.02□□□□□ -0.33
COL7A1-201ENST00000328333 WDR89Q96FK6 387 aaPredicted RBP13.02□□□□□ -0.33
COL7A1-201ENST00000328333 FCN1O00602 326 aa13.01□□□□□ -0.33
COL7A1-201ENST00000328333 DSCR3O14972 297 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms