RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GPR18Q14330 331 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 PLBD1Q6P4A8 553 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 USP53Q70EK8 1073 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SLC24A4Q8NFF2 622 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 GJC3Q8NFK1 279 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 TOMM40LQ969M1 308 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 OR2A7Q96R45 310 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SIGLEC11Q96RL6 698 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 PMCHL2Q9BQD1 86 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ACKR4Q9NPB9 350 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 TAC3Q9UHF0 121 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 OPN4Q9UHM6 478 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SNX11Q9Y5W9 270 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 FAM90A26D6RGX4 464 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CD8AP01732 235 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 AADACP22760 399 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 HTR5AP47898 357 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 FHITP49789 147 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 SGSHP51688 502 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 PLXDC2Q6UX71 529 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 NLGN4XQ8N0W4 816 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 GABRG1Q8N1C3 465 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 AKR7LQ8NHP1 331 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 SLC35E1Q96K37 410 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 SARGQ9BW04 601 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 OR51B6Q9H340 312 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 UCK1Q9HA47 277 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 PRTFDC1Q9NRG1 225 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 FBLN5Q9UBX5 448 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 PRR14LQ5THK1 2151 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 A0A0B4J203 849 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 A0A1B0GW64 132 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ST6GAL1P15907 406 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 HOXD9P28356 352 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 SOX3P41225 446 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 P2RY1P47900 373 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CCL23P55773 120 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 HTRA3P83110 453 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 DGKZQ13574 1117 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 MAMSTRQ6ZN01 415 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 TGIF2LYQ8IUE0 185 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 MKXQ8IYA7 352 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 MRGPRX1Q96LB2 322 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 BARHL1Q9BZE3 327 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 PLEKHF2Q9H8W4 249 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 DLL4Q9NR61 685 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 MARCH4Q9P2E8 410 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CD84Q9UIB8 345 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 OR52A1Q9UKL2 312 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 BOKQ9UMX3 212 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 A0A1B0GVG6 124 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 DNASE2O00115 360 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 AKR7A2O43488 359 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 NGFRP08138 427 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 DBHP09172 617 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 APOBEC1P41238 236 aaKnown RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 RPL29P47914 159 aaKnown RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 HERVK_113P61574 105 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 RPS25P62851 125 aaKnown RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF687Q8N1G0 1237 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 STXBP6Q8NFX7 210 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 OR4B1Q8NGF8 309 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 OR4A4PQ8NGN8 299 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 IL21RQ9HBE5 538 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 Q9N2K0 584 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 USP22Q9UPT9 525 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 EMC9Q9Y3B6 208 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 MCRIP1C9JLW8 97 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CYTIPO60759 359 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 WISP3O95389 354 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 HPNP05981 417 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 FGF2P09038 288 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 LIPCP11150 499 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 KIR2DS2P43631 304 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ARSDP51689 593 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 HNRNPA3P51991 378 aaKnown RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 EMP2P54851 167 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF141Q15928 474 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 THEM4Q5T1C6 240 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 FDX2Q6P4F2 183 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ERASQ7Z444 233 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 GRASPQ7Z6J2 395 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 C1QL4Q86Z23 238 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CITED2Q99967 270 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 WDR83Q9BRX9 315 aaKnown RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 MTCH1Q9NZJ7 389 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 RARRES3Q9UL19 164 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ARHGAP32A7KAX9 2087 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 A0A0J9YY10 115 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ANKUB1A6NFN9 424 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CH25HO95992 272 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 HOXB2P14652 356 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CEBPBP17676 345 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 LMO2P25791 158 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 GDI1P31150 447 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 MYBPHQ13203 477 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 HNRNPA1L2Q32P51 320 aaKnown RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 VAX1Q5SQQ9 334 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 SLC26A10Q8NG04 563 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 TMEM106AQ96A25 262 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms