RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CBLL1Q75N03 491 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 SLCO4A1Q96BD0 722 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 RSRC1Q96IZ7 334 aaKnown RBP12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 FAM32AQ9Y421 112 aaKnown RBP12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 KPTNQ9Y664 436 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 ENPP4Q9Y6X5 453 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 IGLV1-36A0A0B4J1U3 117 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 LOC100653049A0A140TA62 436 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 C3orf80F5H4A9 247 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 IMPA2O14732 288 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 GSTA4O15217 222 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 KRT34O76011 436 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 PPP1R3DO95685 299 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 RENP00797 406 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 H1F0P07305 194 aaKnown RBP12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 FBP1P09467 338 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 TROVE2P10155 538 aaKnown RBP eCLIP12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 CA6P23280 308 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 TRAP1Q12931 704 aaKnown RBP12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 MEP1BQ16820 701 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 FBLN7Q53RD9 439 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 SFRP4Q6FHJ7 346 aaPredicted RBP12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 DHRS7BQ6IAN0 325 aaPredicted RBP12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 SLC18B1Q6NT16 456 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 BOLLQ8N9W6 283 aaKnown RBP12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 C19orf18Q8NEA5 215 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 SLC26A10Q8NG04 563 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 SPTSSAQ969W0 71 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 HSH2DQ96JZ2 352 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 ADAT1Q9BUB4 502 aaKnown RBP12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 CNTD2Q9H8S5 307 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 SAR1AQ9NR31 198 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 MRPL15Q9P015 296 aaKnown RBP12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 KAAG1Q9UBP8 84 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 KCNG2Q9UJ96 466 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 B9D1Q9UPM9 204 aa12.21□□□□□ -0.45
CCDC88B-201ENST00000301897 A0A0U1RQK1 487 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 A0A1B0GVI7 797 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 UNC119BA6NIH7 251 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 CD300LBA8K4G0 201 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 CXCR6O00574 342 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 TSPAN15O95858 294 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 GGT2P36268 569 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 ARF6P62330 175 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 CDONQ4KMG0 1287 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 FGD3Q5JSP0 725 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 SMARCD3Q6STE5 483 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 METAP1DQ6UB28 335 aaPredicted RBP12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 CFAP77Q6ZQR2 320 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 BTN2A1Q7KYR7 527 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 TSEN54Q7Z6J9 526 aaKnown RBP12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 CMTM4Q8IZR5 234 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 GALNT4Q8N4A0 578 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 FAM110DQ8TAY7 271 aaPredicted RBP12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 TSSK2Q96PF2 358 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 OPA3Q9H6K4 179 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 C14orf119Q9NWQ9 140 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 CMTM6Q9NX76 183 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 CYB5R1Q9UHQ9 305 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 NOTCH3Q9UM47 2321 aa12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 TET2Q6N021 2002 aaPredicted RBP12.2□□□□□ -0.46
CCDC88B-201ENST00000301897 GGT3PA6NGU5 568 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 M0R135 149 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 DCTN6O00399 190 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 NDUFAB1O14561 156 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 DVL1O14640 695 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 ARPC3O15145 178 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 SLC22A2O15244 555 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 GPR37O15354 613 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 TSPAN9O75954 239 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 CSF1P09603 554 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 RHCEP18577 417 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 TGFBR2P37173 567 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 OMPP47874 163 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 GUCA2AQ02747 115 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 Q6ZSV7 163 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 ZBTB46Q86UZ6 589 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 ZNF799Q96GE5 643 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 ERMAPQ96PL5 475 aaPredicted RBP12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 SMURF1Q9HCE7 757 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 SRA1Q9HD15 236 aaKnown RBP12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 C1orf123Q9NWV4 160 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 RPUSD1Q9UJJ7 312 aaKnown RBP12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 VPREB3Q9UKI3 123 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 CAPN7Q9Y6W3 813 aa12.19□□□□□ -0.46
CCDC88B-201ENST00000301897 A6NLC8 198 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 IDH3BO43837 385 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 OR10H3O60404 316 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 SERPINA1P01009 418 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 HLA-DQA2P01906 255 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 GYPAP02724 150 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 MUC1P15941 1255 aaPredicted RBP12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 EEF1B2P24534 225 aaKnown RBP12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 SLC6A6P31641 620 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 GRK5P34947 590 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 PRSS12P56730 875 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 FXYD6P3P58550 94 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 LIPEQ05469 1076 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms