RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 C2orf50Q96LR7 162 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 PATZ1Q9HBE1 687 aaKnown RBP9.72□□□□□ -0.85
CD44-201ENST00000263398 FOXJ3Q9UPW0 622 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 NSG2Q9Y328 171 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 F6UZH7 168 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 XRCC2O43543 280 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 FZD2Q14332 565 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.72□□□□□ -0.85
CD44-201ENST00000263398 HIST2H3AQ71DI3 136 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 ARRDC1Q8N5I2 433 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 AMER3Q8N944 861 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 THOC3Q96J01 351 aaKnown RBP9.72□□□□□ -0.85
CD44-201ENST00000263398 FAM166BA8MTA8 275 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 OR2J2O76002 312 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 CD160O95971 181 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 KIAA0141Q14154 515 aaPredicted RBP9.72□□□□□ -0.85
CD44-201ENST00000263398 OTPQ5XKR4 325 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 Q6ZRG5 221 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 TMEM229BQ8NBD8 167 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 OR2AE1Q8NHA4 323 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 ST8SIA2Q92186 375 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 C12orf49Q9H741 205 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 STRAPQ9Y3F4 350 aaKnown RBP9.72□□□□□ -0.85
CD44-201ENST00000263398 OR2W5A6NFC9 320 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 PYCARD-AS1I3L0S3 204 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 HS3ST1O14792 307 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 CXCL13O43927 109 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 ACKR3P25106 362 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 HOXC8P31273 242 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 NDUFA6P56556 154 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 UBE2IP63279 158 aaKnown RBP9.71□□□□□ -0.85
CD44-201ENST00000263398 FLI1Q01543 452 aaPredicted RBP9.71□□□□□ -0.85
CD44-201ENST00000263398 EDDM3AQ14507 147 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 TMEM71Q6P5X7 295 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 TEX261Q6UWH6 196 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 TP53I13Q8NBR0 393 aaPredicted RBP9.71□□□□□ -0.85
CD44-201ENST00000263398 GPX8Q8TED1 209 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 TWSG1Q9GZX9 223 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 C20orf141Q9NUB4 165 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 U3KQ87 197 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 DOCK1Q14185 1865 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 FER1L6Q2WGJ9 1857 aa9.71□□□□□ -0.85
CD44-201ENST00000263398 A0A087WZY1 265 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 WNT11O96014 354 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 CISD3P0C7P0 127 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 RAB4AP20338 218 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 S100A7P31151 101 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 GLDNQ6ZMI3 551 aaPredicted RBP9.71□□□□□ -0.86
CD44-201ENST00000263398 MAMSTRQ6ZN01 415 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 TMEM182Q6ZP80 229 aaPredicted RBP9.71□□□□□ -0.86
CD44-201ENST00000263398 GCNT2Q8N0V5 402 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 HPSE2Q8WWQ2 592 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 RNF32Q9H0A6 362 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 TRBV5-3A0A0A0MS03 114 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 SERPINE3A8MV23 424 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 NME2P1O60361 137 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 CTSVO60911 334 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 WDR1O75083 606 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 ZFPL1O95159 310 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 SCGB1D1O95968 90 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 FOXF1Q12946 379 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 TMEM128Q5BJH2 165 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 TMEM215Q68D42 235 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 C8orf82Q6P1X6 216 aaPredicted RBP9.71□□□□□ -0.86
CD44-201ENST00000263398 C6orf15Q6UXA7 325 aaPredicted RBP9.71□□□□□ -0.86
CD44-201ENST00000263398 C17orf107Q6ZR85 190 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 H2BFWTQ7Z2G1 175 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 C15orf54Q8N8G6 183 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 RTN4IP1Q8WWV3 396 aaPredicted RBP9.71□□□□□ -0.86
CD44-201ENST00000263398 PP6455Q8WZ26 134 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 RDH5Q92781 318 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 KTI12Q96EK9 354 aaPredicted RBP9.71□□□□□ -0.86
CD44-201ENST00000263398 SLC17A5Q9NRA2 495 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 AK3Q9UIJ7 227 aa9.71□□□□□ -0.86
CD44-201ENST00000263398 NRXN2Q9P2S2 1712 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 NDUFB6O95139 128 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 NXPH3O95157 252 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 ZNF121P58317 390 aaPredicted RBP9.7□□□□□ -0.86
CD44-201ENST00000263398 PNLIPRP3Q17RR3 467 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 ZNF547Q8IVP9 402 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 OR52B4Q8NGK2 314 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 C11orf40Q8WZ69 217 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 OR2A5Q96R48 311 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 FAM234AQ9H0X4 552 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 PLEKHB1Q9UF11 243 aaPredicted RBP9.7□□□□□ -0.86
CD44-201ENST00000263398 RNF150Q9ULK6 438 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 EXOGQ9Y2C4 368 aaKnown RBP9.7□□□□□ -0.86
CD44-201ENST00000263398 URGCP-MRPS24S4R325 110 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 CD37P11049 281 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 TMEM268Q5VZI3 342 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 ZNF573Q86YE8 665 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 BATF2Q8N1L9 274 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 SLC35G3Q8N808 338 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 OR1N1Q8NGS0 311 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 ZNF764Q96H86 408 aaPredicted RBP9.7□□□□□ -0.86
CD44-201ENST00000263398 MENTQ9BUN1 341 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 C20orf24Q9BUV8 137 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 NUDT9Q9BW91 350 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 ANKUB1A6NFN9 424 aa9.7□□□□□ -0.86
CD44-201ENST00000263398 METTL12A8MUP2 240 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms