RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SLC17A4Q9Y2C5 497 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 ARL2-SNX15V9GYD0 113 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 A0A1W2PP64 1363 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 POLR3AO14802 1390 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 ISLRO14498 428 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 RPA3P35244 121 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 LIMS1P48059 325 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CTSCP53634 463 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 LRRC26Q2I0M4 334 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PRRT3Q5FWE3 981 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 C12orf42Q96LP6 360 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 FSCN3Q9NQT6 498 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 DENND4CQ5VZ89 1909 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 LOC105371242A0A075B767 164 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PPIAL4CA0A0B4J2A2 164 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SULT2B1O00204 365 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SDHDO14521 159 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SLC16A8O95907 504 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PPIAL4GP0DN37 164 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 HIST1H1BP16401 226 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 STARD6P59095 220 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SRSF7Q16629 238 aaKnown RBP eCLIP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 IAH1Q2TAA2 248 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SIRPB2Q5JXA9 342 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 BAGE3Q86Y29 109 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 BAGE2Q86Y30 109 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CFAP52Q8N1V2 620 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR52E4Q8NGH9 312 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ACER1Q8TDN7 264 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SULT4A1Q9BR01 284 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ATG10Q9H0Y0 220 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SHANK2Q9UPX8 1470 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SIPA1L1O43166 1804 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ANGPTL7O43827 346 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SFTA3P0C7M3 94 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 GKN3PP0CG01 181 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PLP2Q04941 152 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ENDOGQ14249 297 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 LRRC37A5PQ49AS3 106 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ABHD17BQ5VST6 288 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 FAM71E1Q6IPT2 247 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 LDLRAD3Q86YD5 345 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ANKRD29Q8N6D5 301 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 LINC00116Q8NCU8 138 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 STT3BQ8TCJ2 826 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF670Q9BS34 389 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SNRNP25Q9BV90 132 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SEMA4BQ9NPR2 832 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 VDAC3Q9Y277 283 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SSH2Q76I76 1423 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 MRC2Q9UBG0 1479 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM129A0AVI4 362 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR10J1P30954 320 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CCR2P41597 374 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 MTNR1AP48039 350 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 MYBPHQ13203 477 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 IL13RA2Q14627 380 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 MICAQ29983 383 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SOWAHCQ53LP3 525 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 GDF6Q6KF10 455 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 HSD11B1LQ7Z5J1 315 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 C15orf54Q8N8G6 183 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 DNERQ8NFT8 737 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR5D16Q8NGK9 328 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CASTOR1Q8WTX7 329 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 LRRC29Q8WV35 223 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 TFAP2CQ92754 450 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 TBX15Q96SF7 602 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CALHM2Q9HA72 323 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 HHATLQ9HCP6 504 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM100Q9NV29 134 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PSG11Q9UQ72 335 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PRSS38A1L453 326 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 MPTX1A8MV57 137 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 UMAD1C9J7I0 102 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 TYRP14679 529 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PSMB10P40306 273 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 APOBEC1P41238 236 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CRISP1P54107 249 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 UCNP55089 124 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CSNK1G2P78368 415 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 INCA1Q0VD86 236 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ZP4Q12836 540 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 TP53I3Q53FA7 332 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SCCPDHQ8NBX0 429 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 DUX3Q96PT4 197 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR4K3Q96R72 315 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 NUDT22Q9BRQ3 303 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PSMG3Q9BT73 122 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 WDCPQ9H6R7 721 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ST3GAL6Q9Y274 331 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 NOP16Q9Y3C1 178 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CHST2Q9Y4C5 530 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 A0A1W2PP55 124 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CHADO15335 359 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 NPPBP16860 134 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PRLHRP49683 370 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 FAM174BQ3ZCQ3 159 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF385BQ569K4 471 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 IL17RELQ6ZVW7 336 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms