RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 GPR151Q8TDV0 419 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PIBF1Q8WXW3 757 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 GHSRQ92847 366 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SYAP1Q96A49 352 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 TMEM230Q96A57 120 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 FAM19A4Q96LR4 140 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 C16orf45Q96MC5 204 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 RNF145Q96MT1 663 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 TTC25Q96NG3 672 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 RPRD1AQ96P16 312 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 OR5B12Q96R08 314 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SEC22CQ9BRL7 303 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 CRACR2AQ9BSW2 395 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 RSG1Q9BU20 258 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 TMEM243Q9BU79 118 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 NUDT9Q9BW91 350 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 GON7Q9BXV9 100 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 OR51M1Q9H341 326 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 RIBC2Q9H4K1 309 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SND1-IT1Q9HBX3 110 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 FAM60AQ9NP50 221 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 TMEM9BQ9NQ34 198 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 DAZ1Q9NQZ3 744 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 CA10Q9NS85 328 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 MTCH1Q9NZJ7 389 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 PDP1Q9P0J1 537 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 CGNQ9P2M7 1197 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 PISDQ9UG56 409 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 MRPS7Q9Y2R9 242 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 STARD10Q9Y365 291 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 SAMHD1Q9Y3Z3 626 aaKnown RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 KIF3AQ9Y496 699 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 HYOU1Q9Y4L1 999 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 N6AMT1Q9Y5N5 214 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 AP1M2Q9Y6Q5 423 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 KIF16BQ96L93 1317 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 ADGRB3O60242 1522 aa0.07□□□□□ -2.4
VPS35-212ENST00000640313 COL5A3P25940 1745 aaPredicted RBP0.07□□□□□ -2.4
VPS35-212ENST00000640313 MED13Q9UHV7 2174 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 COL22A1Q8NFW1 1626 aaPredicted RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 AKNAQ7Z591 1439 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 COL6A6A6NMZ7 2263 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 KMT2EQ8IZD2 1858 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 IGKV1OR2-108A0A075B7D4 117 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TRBV9A0A0B4J1U6 114 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 A0A1W2PNM2 257 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 OR6C74A6NCV1 312 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 GOLGA8SH3BPF8 625 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 C15orf65H3BRN8 121 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TNFRSF11BO00300 401 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 MFNGO00587 321 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 GABRPO00591 440 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 DNALI1O14645 258 aaPredicted RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 RAB29O14966 203 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 PPP1R2P9O14990 202 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ERI3O43414 337 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 EIF4E2O60573 245 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 EIF1BO60739 113 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 FKBP6O75344 327 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 MTX2O75431 263 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CLDN11O75508 207 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 FLOT1O75955 427 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ERLIN2O94905 339 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 SCELO95171 688 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 GUCA1CO95843 209 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 PAHP00439 452 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 IGHV1-46P01743 117 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 IGLV7-43P04211 117 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ARG1P05089 322 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 SERPIND1P05546 499 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 PFN1P07737 140 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 SLC35G6P0C7Q6 338 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 PGA4P0DJD7 388 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 PGA3P0DJD8 388 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 PGA5P0DJD9 388 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 ARL14EPLP0DKL9 152 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CD37P11049 281 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 IFI30P13284 250 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TCP1P17987 556 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 GGT1P19440 569 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 RAB4AP20338 218 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 USF1P22415 310 aaPredicted RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 WARSP23381 471 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 GLRA2P23416 452 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 OR1E1P30953 314 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CASP14P31944 242 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 PFN2P35080 140 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CFHR2P36980 270 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TAGLN2P37802 199 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 MYCNOSP40205 109 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 EIF1P41567 113 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 RBM34P42696 430 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 GALR1P47211 349 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 TGM4P49221 684 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 CEBPDP49716 269 aaPredicted RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 TMED10P49755 219 aaKnown RBP0.06□□□□□ -2.4
VPS35-212ENST00000640313 HNMTP50135 292 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 FABP6P51161 128 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 UBE2E1P51965 193 aa0.06□□□□□ -2.4
VPS35-212ENST00000640313 GBX2P52951 348 aaPredicted RBP0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms