RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SLC25A30Q5SVS4 291 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 FRG2Q64ET8 278 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CNKSR3Q6P9H4 555 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 MDGA2Q7Z553 956 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 SYT9Q86SS6 491 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF101Q8IZC7 436 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 LYG1Q8N1E2 194 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 TTC9BQ8N6N2 239 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 SIGLECL1Q8N7X8 197 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PNPLA1Q8N8W4 532 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CLEC18CQ8NCF0 446 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 RHBDD1Q8TEB9 315 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 FRG2BQ96QU4 278 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 SIGMAR1Q99720 223 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 AHSPQ9NZD4 102 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CKLFQ9UBR5 152 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CRLS1Q9UJA2 301 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 COX11Q9Y6N1 276 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 MAP1LC3B2A6NCE7 125 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 F8VVB4 439 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 F8VWA3 439 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 TBX6O95947 436 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 HAND1O96004 215 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 TTRP02766 147 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 FCGR3AP08637 254 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 ADRA2AP08913 450 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CTSAP10619 480 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 RPL12P30050 165 aaKnown RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CXCR3P49682 368 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 FABP6P51161 128 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 ST3GAL3Q11203 375 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 MMDQ15546 238 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 WSCD1Q658N2 575 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 BTNL8Q6UX41 500 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 MEPCEQ7L2J0 689 aaKnown RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 MOB1BQ7L9L4 216 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 LINC01551Q86U37 167 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 FAM58AQ8N1B3 248 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 OR6K2Q8NGY2 324 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 TSEN15Q8WW01 171 aaKnown RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 C20orf144Q9BQM9 153 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 TTTY10Q9BZA0 68 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PKIBQ9C010 78 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 MAP1LC3BQ9GZQ8 125 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CTDSP1Q9GZU7 261 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 EGLN3Q9H6Z9 239 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 MRPS18AQ9NVS2 196 aaKnown RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 RBFOX3A6NFN3 312 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 PDE6DO43924 150 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 GPR32O75388 356 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 CXCL1P09341 107 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 TACSTD2P09758 323 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 NBEAP1P0C6P0 100 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 NDUFV2P19404 249 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 SRMP19623 302 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 SOX2P48431 317 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 CLDN18P56856 261 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 RING1Q06587 406 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 IL24Q13007 206 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 PIN1Q13526 163 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-216ENST00000637968 HIST3H3Q16695 136 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 PGGHGQ32M88 737 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 TP53I3Q53FA7 332 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 HIKESHIQ53FT3 197 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 CST9Q5W186 159 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 WDR74Q6RFH5 385 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-216ENST00000637968 SLC24A5Q71RS6 500 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 LHFPL4Q7Z7J7 247 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 OR6T1Q8NGN1 323 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 DERL3Q96Q80 235 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 TRMT61BQ9BVS5 477 aaKnown RBP5.19□□□□□ -1.58
SCN1A-216ENST00000637968 RBKSQ9H477 322 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 ZDHHC11Q9H8X9 412 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 ABI3Q9P2A4 366 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 CLN8Q9UBY8 286 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 SNED1Q8TER0 1413 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 SCGB1A1P11684 91 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 PTHLHP12272 177 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 MC4RP32245 332 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 CCL23P55773 120 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 PAFAH1B2P68402 229 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 HBA1P69905 142 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 C17orf67Q0P5P2 114 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 MLC1Q15049 377 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 ELOCQ15369 112 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 SLC10A6Q3KNW5 377 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 CHRDL2Q6WN34 429 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 C10orf111Q8N326 155 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 NECAP1Q8NC96 275 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 AGBL5Q8NDL9 886 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 ST6GALNAC3Q8NDV1 305 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 SEH1LQ96EE3 360 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 TPSD1Q9BZJ3 242 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 SLC32A1Q9H598 525 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 SRD5A3Q9H8P0 318 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 ISG20L2Q9H9L3 353 aaKnown RBP5.19□□□□□ -1.58
SCN1A-216ENST00000637968 OR5V1Q9UGF6 321 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 TOGARAM1Q9Y4F4 1720 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 TOPAZ1Q8N9V7 1692 aa5.19□□□□□ -1.58
SCN1A-216ENST00000637968 A0A1W2PRS3 328 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms