RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 COMMD2Q86X83 199 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 C20orf196Q8IYI0 205 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 ZNF283Q8N7M2 679 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 OR2M7Q8NG81 312 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 OR4D10Q8NGI6 311 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 KCNE4Q8WWG9 221 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 ITFG2Q969R8 447 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 FAM71F1Q96KD3 344 aaPredicted RBP12.74□□□□□ -0.37
VRK3-217ENST00000599538 PCDHGA1Q9Y5H4 931 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 URB1O60287 2271 aaKnown RBP12.74□□□□□ -0.37
VRK3-217ENST00000599538 MEGF11A6BM72 1044 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 DHFRP00374 187 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 DBHP09172 617 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 H2AFB2P0C5Z0 115 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 POU3F2P20265 443 aaPredicted RBP12.74□□□□□ -0.37
VRK3-217ENST00000599538 BDKRB2P30411 391 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 CCDC92Q53HC0 331 aaPredicted RBP12.74□□□□□ -0.37
VRK3-217ENST00000599538 NOXA1Q86UR1 476 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 OR1M1Q8NGA1 313 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 GIMAP1Q8WWP7 306 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 FBXO17Q96EF6 278 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 OR2B2Q9GZK3 357 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 C20orf85Q9H1P6 137 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 DIABLOQ9NR28 239 aa12.74□□□□□ -0.37
VRK3-217ENST00000599538 CNOT1A5YKK6 2376 aaKnown RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 FREM1Q5H8C1 2179 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 A0A1B0GVI7 797 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 WIPF3A6NGB9 483 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 F5H5K5 113 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 H7C417 338 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 ECDO95905 644 aaPredicted RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 HPXP02790 462 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 MRPS10P82664 201 aaKnown RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 ST3GAL2Q16842 350 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 LINC00303Q3SY05 128 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 SULF2Q8IWU5 870 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 PAQR4Q8N4S7 273 aaPredicted RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 OR11H7Q8NGC8 314 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 OR2V1Q8NHB1 315 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 ABHD3Q8WU67 409 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 NKD1Q969G9 470 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 LYZL4Q96KX0 146 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 ALKBH3Q96Q83 286 aaPredicted RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 OR10A4Q9H209 315 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 MTFP1Q9UDX5 166 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 MYO7BQ6PIF6 2116 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 FAM166BA8MTA8 275 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 STMND1H3BQB6 276 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 GUCA1AP43080 201 aaPredicted RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 OR1C1Q15619 314 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 PCGF3Q3KNV8 242 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 ZNF529Q6P280 563 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 ZNF627Q7L945 461 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 ADGRE4PQ86SQ3 457 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 TCTE3Q8IZS6 198 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 IL22RA1Q8N6P7 574 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 UTP23Q9BRU9 249 aaKnown RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 SF3B5Q9BWJ5 86 aaKnown RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 ZNF703Q9H7S9 590 aaPredicted RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 NIPAL2Q9H841 368 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 CRLF2Q9HC73 371 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 MOV10Q9HCE1 1003 aaKnown RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 TMEM138Q9NPI0 162 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 PAQR5Q9NXK6 330 aaPredicted RBP12.73□□□□□ -0.37
VRK3-217ENST00000599538 COPZ2Q9P299 210 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 ZFHX4Q86UP3 3567 aa12.73□□□□□ -0.37
VRK3-217ENST00000599538 CFAP47Q6ZTR5 3102 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 DNPH1O43598 174 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 RBBP9O75884 186 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 PATE4P0C8F1 98 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 GABRA1P14867 456 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 CXCL3P19876 107 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 PSMB1P20618 241 aaKnown RBP12.72□□□□□ -0.37
VRK3-217ENST00000599538 VEGFCP49767 419 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 SRYQ05066 204 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 UNC119Q13432 240 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 Q5BKY6 102 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 OLFML2AQ68BL7 652 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 ABLIM2Q6H8Q1 611 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 JMJD6Q6NYC1 403 aaPredicted RBP12.72□□□□□ -0.37
VRK3-217ENST00000599538 RTN4RL2Q86UN3 420 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 OR5AS1Q8N127 324 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 NKAIN3Q8N8D7 197 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 GJC3Q8NFK1 279 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 OR5D14Q8NGL3 314 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 FAM46BQ96A09 425 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 PHF21AQ96BD5 680 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 CYYR1Q96J86 154 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 FAM173AQ9BQD7 235 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 OR51J1Q9H342 316 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 MOB1AQ9H8S9 216 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 SLC17A5Q9NRA2 495 aa12.72□□□□□ -0.37
VRK3-217ENST00000599538 NR2C1P13056 603 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 MAGEA5P43359 124 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 AP3S2P59780 193 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 GRB2P62993 217 aaKnown RBP12.71□□□□□ -0.37
VRK3-217ENST00000599538 HIST1H3AP68431 136 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 MRPS15P82914 257 aaKnown RBP12.71□□□□□ -0.37
VRK3-217ENST00000599538 HIST2H3PS2Q5TEC6 136 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 HIST2H3AQ71DI3 136 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms