RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 HPXP02790 462 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 HSD11B1P28845 292 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 OPRL1P41146 370 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 NAA10P41227 235 aaPredicted RBP10.14□□□□□ -0.79
LIG3-213ENST00000590630 NR4A2P43354 598 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 MAGEB1P43366 347 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 CDC42P60953 191 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 CCL8P80075 99 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 HLXQ14774 488 aaPredicted RBP10.14□□□□□ -0.79
LIG3-213ENST00000590630 CARTPTQ16568 116 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 AADACL4Q5VUY2 407 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 MEPCEQ7L2J0 689 aaKnown RBP10.14□□□□□ -0.79
LIG3-213ENST00000590630 SLC16A9Q7RTY1 509 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 NAA40Q86UY6 237 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 GID4Q8IVV7 300 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 OR8J1Q8NGP2 316 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 GTF3AQ92664 365 aaKnown RBP10.14□□□□□ -0.79
LIG3-213ENST00000590630 RDH5Q92781 318 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 EME1Q96AY2 570 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 HRASLS5Q96KN8 279 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 IL4I1Q96RQ9 567 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 CNN2Q99439 309 aaKnown RBP10.14□□□□□ -0.79
LIG3-213ENST00000590630 CHODLQ9H9P2 273 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 DECR2Q9NUI1 292 aa10.14□□□□□ -0.79
LIG3-213ENST00000590630 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.14□□□□□ -0.794e-47■■■■■ 172
LIG3-213ENST00000590630 ZSCAN5BA6NJL1 495 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 TPD52L2O43399 206 aaKnown RBP10.13□□□□□ -0.79
LIG3-213ENST00000590630 SPRY3O43610 288 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 BAG2O95816 211 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 CD55P08174 381 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 SELEP16581 610 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 ACHEP22303 614 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 USF1P22415 310 aaPredicted RBP10.13□□□□□ -0.79
LIG3-213ENST00000590630 PRKXP51817 358 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 LOXL1Q08397 574 aaPredicted RBP10.13□□□□□ -0.79
LIG3-213ENST00000590630 CDK5R2Q13319 367 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 RIN1Q13671 783 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 GK2Q14410 553 aaPredicted RBP10.13□□□□□ -0.79
LIG3-213ENST00000590630 CLEC9AQ6UXN8 241 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 ZBTB49Q6ZSB9 765 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 SPATC1Q76KD6 591 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 ZNF283Q8N7M2 679 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 THEM6Q8WUY1 208 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 TRUB1Q8WWH5 349 aaKnown RBP10.13□□□□□ -0.79
LIG3-213ENST00000590630 AMELYQ99218 206 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 EGLN1Q9GZT9 426 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 OPA3Q9H6K4 179 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 SP140LQ9H930 580 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 SAP30LQ9HAJ7 183 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 MSL2Q9HCI7 577 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 IMPAD1Q9NX62 359 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 HAO2Q9NYQ3 351 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 LAMP5Q9UJQ1 280 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 TMEM14AQ9Y6G1 99 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 DYSFO75923 2080 aa10.13□□□□□ -0.79
LIG3-213ENST00000590630 IGHV1-69-2A0A0G2JMI3 117 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 IQCF6A8MYZ5 107 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 HEXAP06865 529 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 H2BFMP0C1H6 154 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 ALOX5APP20292 161 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 TNFSF4P23510 183 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 CRYBB2P43320 205 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 CX3CR1P49238 355 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 TMEM33P57088 247 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 TSTQ16762 297 aaKnown RBP10.12□□□□□ -0.79
LIG3-213ENST00000590630 SNAI3Q3KNW1 292 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 OR2T2Q6IF00 324 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 KCTD18Q6PI47 426 aaPredicted RBP10.12□□□□□ -0.79
LIG3-213ENST00000590630 DEGS2Q6QHC5 323 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 PGAP1Q75T13 922 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 MRPL21Q7Z2W9 205 aaKnown RBP10.12□□□□□ -0.79
LIG3-213ENST00000590630 BCDIN3DQ7Z5W3 292 aaKnown RBP10.12□□□□□ -0.79
LIG3-213ENST00000590630 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.12□□□□□ -0.79
LIG3-213ENST00000590630 MAPK1IP1LQ8NDC0 245 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 OR8G5Q8NG78 346 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 OR52H1Q8NGJ2 320 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 FAM81AQ8TBF8 368 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 ASB17Q8WXJ9 295 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 RFKQ969G6 155 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 ELMOD3Q96FG2 381 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 ZNF582Q96NG8 517 aaPredicted RBP10.12□□□□□ -0.79
LIG3-213ENST00000590630 MNTQ99583 582 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 SMR3AQ99954 134 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 BPESC1Q9GZL8 116 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 NIPAL2Q9H841 368 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 WARS2Q9UGM6 360 aaKnown RBP10.12□□□□□ -0.79
LIG3-213ENST00000590630 C2CD3Q4AC94 2353 aa10.12□□□□□ -0.79
LIG3-213ENST00000590630 SONP18583 2426 aaKnown RBP10.12□□□□□ -0.79
LIG3-213ENST00000590630 E9PQ18 207 aa10.11□□□□□ -0.79
LIG3-213ENST00000590630 LYNX1G3V0Z9 82 aa10.11□□□□□ -0.79
LIG3-213ENST00000590630 XRCC2O43543 280 aa10.11□□□□□ -0.79
LIG3-213ENST00000590630 RP2O75695 350 aa10.11□□□□□ -0.79
LIG3-213ENST00000590630 ANXA2P07355 339 aaKnown RBP10.11□□□□□ -0.79
LIG3-213ENST00000590630 MRPL3P09001 348 aaKnown RBP10.11□□□□□ -0.79
LIG3-213ENST00000590630 LYNX1P0DP58 116 aa10.11□□□□□ -0.79
LIG3-213ENST00000590630 SLC2A1P11166 492 aa10.11□□□□□ -0.79
LIG3-213ENST00000590630 COL8A2P25067 703 aa10.11□□□□□ -0.79
LIG3-213ENST00000590630 HTR1FP30939 366 aa10.11□□□□□ -0.79
LIG3-213ENST00000590630 TNFAIP6P98066 277 aaPredicted RBP10.11□□□□□ -0.79
LIG3-213ENST00000590630 ROM1Q03395 351 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms